Glyma06g02550 - SoyBase

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Report for Sequence Feature Glyma06g02550

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1701715
stop:	1710503
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20110	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr1:6971554-6974578 FORWARD LENGTH=601	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF80	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
UniRef100_G7J5A0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lateral signaling target protein-like protein n=2 Tax=Medicago truncatula RepID=G7J5A0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7I5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7I5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02550

Paralog	Evidence	Comments
Glyma04g02510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g023000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02550

Limit To All Plant Sequences

>Glyma06g02550.1   sequence type=CDS   gene model=Glyma06g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAAGGAGACTACACCTCCGCTCCATCTCCATATTATCAATTCCCTCATCTCCAAAACCCCAATCCCAATCCCAATCCCAATCCCGATCCACACCCAAACAACCCTTACGCTTCTGCACCTCCCTTCACCCCCAATTACGCTCCCTCCGATTACACCCCTTACCCTTCCTACCCTCAAAATCCCGATCCTTCTCCACCCACTGCTCCTTCCTTTCCTCCCTCTTCTTCCAACCCTAATTTACCCCCTCCTTTCAATCCTCCCTTCGAATCTAACCCTCCCTACCAACAACAACAACCCTATTTCTCACCATATGATCAGCATCAAACGCCTCCCAACCCCAATTCCACTCCCTCCTCATACAACCCTGTCCCTTCTCCCTACAGCTACTCCGGACCCTCCTCCGTTCCTCCGATTCCGACCTACGAACCTGCATACGAGGCTCCCGTGAGGCCCGATCAAGGTGGAGGCTACTTTGACGACAGGTACCGAGCCGGATTTACTCGGAGCCATTCCGATTTGGGATCCGATTTTTACGGGAAGAGCGGTGGTGGCGCAGATGATGGATACGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTACGGGGCGCGTGGCACGGCGCCAAAATCGTCGACTTGGGCGGCGTTTGATGATTACGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTTCTGTGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGCTGATACACAACAAGATGTCAAAGGTGGCGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCCGAAAGTGGGGGTCAGAGCACTATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAATACCAGCCGGACATTGAGAATTTATCCTCTTGAGAACATAACAAGATGTGATAGAATCGATTCATCTACCTTTGCATTTTGGTCAAAGAGTCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAGGCAGGAGGCCTGCTGAAGCTGTGAAAACAAATGAACAGTCTTCAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTTATCAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCGGATGAAGCCGTCTCAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACCCATGGTAGAATTGCTCTGACTGCTGATGAGAATGCTCAGCCTGTACGAGTTTGTGACCGTTGCATGGCTGAAGTGACTCAGCGGCTGACTAGTGCGAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCAAAGAAACTTCAGGAGGAACTAGAGAGAAATCAAAAGGCATCAGGTTCCAAGTCTGATGGATCTGCAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCGGGTTCAGAGACTATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA

Predicted protein sequences of Glyma06g02550

Limit To All Plant Sequences

>Glyma06g02550.1   sequence type=predicted peptide   gene model=Glyma06g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQGDYTSAPSPYYQFPHLQNPNPNPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSYPQNPDPSPPTAPSFPPSSSNPNLPPPFNPPFESNPPYQQQQPYFSPYDQHQTPPNPNSTPSSYNPVPSPYSYSGPSSVPPIPTYEPAYEAPVRPDQGGGYFDDRYRAGFTRSHSDLGSDFYGKSGGGADDGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSSVGGKIVKAVPKADTQQDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRIDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDIVTAATIQFKEMGGGRRPAEAVKTNEQSSERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLTSAKESSSKPALQSHEDLAKKLQEELERNQKASGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH*

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