Glyma06g02520 - SoyBase

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Report for Sequence Feature Glyma06g02520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1672443
stop:	1675130
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42170	AT	Annotation by Michelle Graham. TAIR10: SGNH hydrolase-type esterase superfamily protein \| chr5:16848786-16851707 FORWARD LENGTH=369	SoyBase	E_val: 2.00E-135	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7I7T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7I7T3_MEDTR	SoyBase	E_val: 3.00E-144	ISS
UniRef100_I1K7I2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7I2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02520

Paralog	Evidence	Comments
Glyma04g02480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g022700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02520

Limit To All Plant Sequences

>Glyma06g02520.1   sequence type=CDS   gene model=Glyma06g02520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACCTACCTCTATATAATTGCAAGGAATTAGGAGTGAGTAGGAGCAACAGAAAACGCAAAATGGAGTTGTGGAGTGTGGTGTTTGTGTGTTGTGTTTTATGTTATAGTTTTTGTCACAGTGCAGAGGCTATCGTTAAGCTAGGAGGAAATGAAACAATCCCAGCACTGATTTTGTTTGGGGATTCGATCGTTGACACAGGAACTAACAATAACCTAATAACACTGCTTAAGTGCAATTTCCCTCCTTATGGGAGGGATTTCCAGGGTGGGATACCAACAGGAAGATTCAGCAATGGCAAGGTCCCTGCTGACTTCATAGCGGAAGAGTTGGGAATCAGCGAATATATAACACCATACAAGAGTCCTAGTTTGCAGCCTGGTGATCTCCTCAAGGGAGTCAACTTTGCTTCGGGTGGCTCCGGATATGATTCTTTGACCGCACAAATAGTGTCTGTCACACCATTATCTGAGCAACTAGAGCAATTCAAAGAATACATAGGAAAGCTCAAGGGAAATTTTGGAGAAGCAAAAACCAACTTCATCTTGTCCAAAAGTTTAGTACTTGTGGTGTCAAGCAGCAACGACATTGCCAATACTTATTTTGCATCAGGAGTTAGGAAAGTGACTTATGATGTTTCGGGTTATACTGATATGTTGGTGCAAGAAGCCTCTTCTTTCGTTAAGGAATTATATGGATTGGGGGCAAGGAGAATAGGAGTGTTTGGTGCACCTCCACTAGGATGTTTGCCATTCGTACGAACGTTGTTTGGAGGTCTAGAGAGAGTGTGCACCGAAGAAATAAACATGGCATCAAAATTGTTTAACTCTAAACTATCTTCAGAGCTGCACAACCTAAACCAAAGCTTGCCTCAAGCGAAGGTGGTGTATATCCGTATTTACGACTCTTTGCTCAATATCATCCAAAACCCAATCAATTATGGATTTGATGTTGCTGACAGAGGATGCTGCGGTACAGGGACGGTAGAGGCGGCTTTTCTGTGTAATCCGTTAGATCCAACAACCTGCGTAGATGATTCCAAATATGTGTTTTGGGACAGCTACCATCCCACACAAAAGACATACCAAATTCTTGTTGGTGAAATCCTCAACAAATATATAATCAGCTTCTCTTGA

Predicted protein sequences of Glyma06g02520

Limit To All Plant Sequences

>Glyma06g02520.1   sequence type=predicted peptide   gene model=Glyma06g02520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YLPLYNCKELGVSRSNRKRKMELWSVVFVCCVLCYSFCHSAEAIVKLGGNETIPALILFGDSIVDTGTNNNLITLLKCNFPPYGRDFQGGIPTGRFSNGKVPADFIAEELGISEYITPYKSPSLQPGDLLKGVNFASGGSGYDSLTAQIVSVTPLSEQLEQFKEYIGKLKGNFGEAKTNFILSKSLVLVVSSSNDIANTYFASGVRKVTYDVSGYTDMLVQEASSFVKELYGLGARRIGVFGAPPLGCLPFVRTLFGGLERVCTEEINMASKLFNSKLSSELHNLNQSLPQAKVVYIRIYDSLLNIIQNPINYGFDVADRGCCGTGTVEAAFLCNPLDPTTCVDDSKYVFWDSYHPTQKTYQILVGEILNKYIISFS*

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