Glyma06g02500 - SoyBase

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Report for Sequence Feature Glyma06g02500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1665963
stop:	1669340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20160	AT	Annotation by Michelle Graham. TAIR10: Subtilisin-like serine endopeptidase family protein \| chr1:6990852-6993854 REVERSE LENGTH=769	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF05922	PFAM	Peptidase inhibitor I9	JGI		ISS
UniRef100_Q93WQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-type protease n=1 Tax=Glycine max RepID=Q93WQ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LDM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative pre-pro-subtilisin n=1 Tax=Glycine max RepID=Q9LDM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g02500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g022600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02500

Limit To All Plant Sequences

>Glyma06g02500.1   sequence type=CDS   gene model=Glyma06g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGCAATAATACACTTTTGTTGCATTTATTCTACACTACTCTCTTCCTGTTTCTTGTAGTGTCAAGTTCATCTTCAACAGGGAATGAAAGTAACGATGACACTAACAGTAAAGAAGTTTATATCGTGTACATGGGAGCTGCAGATTCAACAAAAGCTTCTCTTAAAAATGAGCACGCTCAGATTCTGAATTCAGTGCTAAGAAGGAATGAGAATGCCCTAGTACGGAACTACAAGCATGGTTTCTCTGGGTTCGCAGCTCGTCTATCAAAAGAGGAGGCAAACTCAATTGCTCAGAAACCTGGTGTGGTGTCTGTTTTCCCTGACCCCATTCTGAAGCTCCACACTACACGTTCATGGGATTTCCTCAAAAGCCAAACTCGTGTCAATATCGACACCAAACCAAATACGCTGTCCGGTTCTTCTTTTTCTTCATCAGACGTCATTCTTGGCGTCTTAGACACAGGCATATGGCCAGAGGCGGCGAGTTTTAGCGACAAGGGTTTCGGTCCTGTTCCATCCCGATGGAAAGGCACCTGCATGACATCAAAAGACTTCAATTCCTCTTGTTGTAACAGGAAGATAATTGGCGCGAGGTTTTACCCTAACCCAGAGGAGAAAACGGCAAGGGATTTCAACGGACATGGGACTCACGTTTCGTCGACGGCAGTGGGCGTGCCGGTGAGTGGCGCATCGTTCTATGGTCTGGCGGCGGGGACGGCAAGGGGTGGGTCCCCTGAGTCAAGGTTGGCGGTTTACAAAGTGTGTGGGGCTTTTGGGTCATGTCCTGGGTCGGCCATTCTTGCGGGGTTTGACGATGCCATTCACGACGGAGTGGATATCTTGTCGCTGTCGCTCGGTGGATTCGGTGGAACCAAAACCGATTTGACCACCGACCCGATTGCGATTGGAGCATTCCACTCCGTCCAGCGCGGCATCCTGGTGGTCTGCGCCGCCGGGAACGACGGAGAACCATTCACCGTTCTCAACGACGCACCTTGGATTTTAACCGTTGCAGCTTCCACCATCGACCGTGATCTTCAATCCGACGTGGTCTTGGGTAATAACCAAGTCGTCAAGGGAAGAGCCATAAATTTCTCCCCTCTTTTAAATTCTCCCGATTATCCAATGATATATGCTGAGTCTGCTGCCAGGGCAAATATCTCCAACATAACTGATGCAAGACAATGCCACCCAGATTCATTAGATCCAAAAAAAGTCATAGGGAAGATTGTGGTTTGTGATGGAAAAAATGACATTTATTATTCAACTGATGAGAAAATTGTCATAGTGAAGGCGTTGGGAGGAATAGGTCTGGTTCATATTACTGATCAATCTGGATCAGTAGCATTTTATTATGTGGACTTCCCAGTAACAGAGGTAAAATCAAAACATGGCGACGCAATCCTCCAGTACATCAACTCAACTAGCCATCCAGTGGGAACAATACTAGCAACAGTTACAATTCCTGATTATAAGCCTGCTCCCCGGGTGGGTTATTTTTCATCAAGAGGGCCTTCATTGATTACAAGCAATGTTCTCAAGCCTGATATTGCAGCCCCGGGAGTTAACATTCTCGCTGCATGGTTTGGAAATGACACATCAGAGGTTCCAAAAGGAAGAAAGCCCTCACTATATCGCATACTCTCAGGAACTTCCATGGCTACTCCACATGTTTCAGGGCTTGCATGCAGTGTCAAAAGAAAAAACCCCACTTGGAGTGCCTCCGCAATCAAATCTGCCATCATGACTTCAGCAATTCAAAATGACAATTTGAAGGGTCCCATAACAACGGATTCAGGGTTGATAGCCACACCTTATGACTATGGAGCAGGGGCAATTACAACATCTGAACCATTGCAACCGGGGCTAGTTTATGAAACCAACAACGTTGACTACTTGAACTATTTGTGTTACAATGGACTTAACATAACCATGATAAAGGTCATCTCCGGAACTGTCCCCGAGAATTTCAATTGTCCCAAGGATTCGAGCTCTGATCTCATCTCCAGCATCAACTACCCTTCCATAGCAGTAAACTTCACTGGCAAAGCAGACGCGGTCGTGAGTAGAACTGTCACAAACGTTGACGAAGAAGATGAAACAGTGTACTTCCCCGTTGTTGAAGCTCCTAGTGAAGTAATTGTCACACTCTTTCCATATAATCTTGAGTTTACGACAAGTATTAAAAAACAAAGCTACAATATTACTTTCAGACCGAAGACCTCCTTGAAGAAAGATTTGTTTGGATCTATCACTTGGAGTAACGACAAATATATGGTTCGAATTCCTTTTGTATTAACTAAATAG

Predicted protein sequences of Glyma06g02500

Limit To All Plant Sequences

>Glyma06g02500.1   sequence type=predicted peptide   gene model=Glyma06g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNNTLLLHLFYTTLFLFLVVSSSSSTGNESNDDTNSKEVYIVYMGAADSTKASLKNEHAQILNSVLRRNENALVRNYKHGFSGFAARLSKEEANSIAQKPGVVSVFPDPILKLHTTRSWDFLKSQTRVNIDTKPNTLSGSSFSSSDVILGVLDTGIWPEAASFSDKGFGPVPSRWKGTCMTSKDFNSSCCNRKIIGARFYPNPEEKTARDFNGHGTHVSSTAVGVPVSGASFYGLAAGTARGGSPESRLAVYKVCGAFGSCPGSAILAGFDDAIHDGVDILSLSLGGFGGTKTDLTTDPIAIGAFHSVQRGILVVCAAGNDGEPFTVLNDAPWILTVAASTIDRDLQSDVVLGNNQVVKGRAINFSPLLNSPDYPMIYAESAARANISNITDARQCHPDSLDPKKVIGKIVVCDGKNDIYYSTDEKIVIVKALGGIGLVHITDQSGSVAFYYVDFPVTEVKSKHGDAILQYINSTSHPVGTILATVTIPDYKPAPRVGYFSSRGPSLITSNVLKPDIAAPGVNILAAWFGNDTSEVPKGRKPSLYRILSGTSMATPHVSGLACSVKRKNPTWSASAIKSAIMTSAIQNDNLKGPITTDSGLIATPYDYGAGAITTSEPLQPGLVYETNNVDYLNYLCYNGLNITMIKVISGTVPENFNCPKDSSSDLISSINYPSIAVNFTGKADAVVSRTVTNVDEEDETVYFPVVEAPSEVIVTLFPYNLEFTTSIKKQSYNITFRPKTSLKKDLFGSITWSNDKYMVRIPFVLTK*

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