Glyma06g02460 - SoyBase

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Report for Sequence Feature Glyma06g02460

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1632699
stop:	1637471
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35890	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr4:16997433-17000410 FORWARD LENGTH=523	SoyBase	E_val: 1.00E-48	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0048523	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR22792	Panther	LUPUS LA RIBONUCLEOPROTEIN	JGI		ISS
PTHR22792:SF23	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05383	PFAM	La domain	JGI		ISS
UniRef100_G7J5C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-quinone oxidoreductase chain n=1 Tax=Medicago truncatula RepID=G7J5C2_MEDTR	SoyBase	E_val: 1.00E-116	ISS
UniRef100_UPI00023398D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398D6 related cluster n=1 Tax=unknown RepID=UPI00023398D6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02460

Paralog	Evidence	Comments
Glyma04g02405	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g022100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02460

Limit To All Plant Sequences

>Glyma06g02460.1   sequence type=CDS   gene model=Glyma06g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACCACCACCGTTGATTCTTCCTCTAACCATCACTCACCCACTGCTGCTGATACCTCTAATAATTTCCCGCAAAAAACCATGCCATCTCCGTGGGCTCAGGTCGTTCGCGGTGCCGACGCTGAACCCAACGATCAATCGCCGCCATCTTCTTCCTCTTCCTCGTCCCTCGATTCCATTAATTCTAACGGTCCCGCCGTTCAAACAAGCGATATCGCCGTGAAACCTGCGTGGAAGAAACCGGAGGCCAATGGCGTCGCCGAAGTTGGGCCTGTAATGGGCGCTCATTCTTGGCCCGATTTATCCGAGTCCACCAAGCCCACCGCTAAATTGACATCTGACTCCTCTGTTAAGACTGCTGCTGATGAAGAGTCAACCACCACTCCTCAGGGTCCTGTTACTTCAGACCCCCCTCAGAAACAAGCCACTGCTAATGCAAAACCTAGTCCTACTCCTGCAATGAACTATGGTATGGCTAATAGACAAAGATCAATGAAGCAGCGTGGAGGGGCAAATGGCAATAATGTTGGGTCTGGTCCTGTTCAGAACAACTTCTCTGGTACTACCCCAAATCTTCCTCCACCACCACCTCCGCCCCCCTTTCCTGTTCTTCTGATGCCTCCAAGTACATTTGCCCATGGGATACCAGGGGCTCCTGTTCCTACTCCAAGGGATCCTTACAGGAACAATAACTGGGATGCAAGACCTCAACATGGGGGTTTTATGCCACCAATGAATGAGCATCGGAGTCCCTCTCACAGGGGCAATGCTGGGCACCATCCACGTGGAGAAGGTCCCTATCACAACAGTTATGGCAACAGGCGCGATCAGGACCGTGTAGGTTATGCAAATACTAGAGATGCTCATGTAAATCAACAGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCACCACCTAATCCTGCTCCATTTATGGGGCCTCAGCCTATGCGACCCCTTGCAAACCCTGCTGGGTTTCCTGAATACTATTATTTCCCAACACTTCAATTTGAACCCTTTGGGGGCATGCCATTTTTCACACATGCACCTCCTCCTGCGATGTTCTACCCGGTTGCAGAAACTCCTCTCACCAATACAATAGCCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTTCTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAGTTGATATTGGATTCATTGAGAACTTCCACTTTTGTGGAAGTGCAGGGGGACAAGTTGAGGAGGCGCACTGAGTGGATGAAGTGGCTTCCGTCTGTTCAGCTTCTGGCCAAGTCTGGCTCAATATCCCCTAGCGAATCAAGTTCTAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGGATGATGCTAAAGTTAACGCCAAGCCTACGGCAAATGATGATGCTGCAGGAGAGTCCTCAACTCAGTCCCAAGTCCCAAATGATGCTACTACTGTGAGCAGCAATTAA

Predicted protein sequences of Glyma06g02460

Limit To All Plant Sequences

>Glyma06g02460.1   sequence type=predicted peptide   gene model=Glyma06g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTTTVDSSSNHHSPTAADTSNNFPQKTMPSPWAQVVRGADAEPNDQSPPSSSSSSSLDSINSNGPAVQTSDIAVKPAWKKPEANGVAEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADEESTTTPQGPVTSDPPQKQATANAKPSPTPAMNYGMANRQRSMKQRGGANGNNVGSGPVQNNFSGTTPNLPPPPPPPPFPVLLMPPSTFAHGIPGAPVPTPRDPYRNNNWDARPQHGGFMPPMNEHRSPSHRGNAGHHPRGEGPYHNSYGNRRDQDRVGYANTRDAHVNQQRMPPRGLMRPPPPNPAPFMGPQPMRPLANPAGFPEYYYFPTLQFEPFGGMPFFTHAPPPAMFYPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPISLIASFPRVRSLTSNIKLILDSLRTSTFVEVQGDKLRRRTEWMKWLPSVQLLAKSGSISPSESSSNNLAADFEKITVDDAKVNAKPTANDDAAGESSTQSQVPNDATTVSSN*

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