Glyma06g02430 - SoyBase

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Report for Sequence Feature Glyma06g02430

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1622055
stop:	1623302
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20190	AT	Annotation by Michelle Graham. TAIR10: expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252	SoyBase	E_val: 1.00E-126	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_I1K7H4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K7H4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GZD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expansin n=1 Tax=Glycine max RepID=Q8GZD3_SOYBN	SoyBase	E_val: 2.00E-141	ISS

Expression Patterns of Glyma06g02430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g02430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g021800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02430

Limit To All Plant Sequences

>Glyma06g02430.1   sequence type=CDS   gene model=Glyma06g02430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGTTTTAGTCAGCTTCCTCGTATTATGCTGTTTCACAATTAGCAATTGCGGCTTCTCTCCTTCTGGGTGGAACAGTGCCCATGCCACTTTTTATGGTGGTATCGATGCCTCTGGGACAAATGGAGGAGCTTGTGGGTATGGGAATATTTTTTCAGCAACAGGTTATGGAACTGATACGACAGCATTGAGTACTGCCTTATTTAACAATGGAGCTTCATGTGGGGAGTGCTACAAAATCACATGCGATTATCGAACAGACCCCAAATGGTGCTTAAAAGGAAAATCAGTAATCGTAACCGCCACGAACTTCTGCCCTCCCAATTTGTCCTTGTCCCCCAACAAAGGAGGGTGGTGCAATCCACCTCTCAAACATTTTGACATGTCTCAACCCGCATGGGAAAAGATTGCTATCTATAGAGGAGGGATCGTGCCCGTGTTCTACCAAAGGGTTCCATGCGCGAGGCAGGGAGGAGTTAGGTTCACTATGAATGGGAACAACTACTTTGAGCTTGTATTGATCACCAATGTGGGAGGAGCTGGATCTATCAAATCTGTGTATATCAAAGGCTCAAAAACTGGATGGATGGCCATGACAAGAAACTGGGGAGAAAATTGGCAGTCCAACGAGTATTTGAATGGTCAATCTTTGTCCTTCAAGGTCACCACCACCGATGGTGTAACTAGACTTTTCCGAGGTGTTGTTCCAGCAAATTGGGCTTTTGGCCAGACTTTCCCTACCCGCGTCCAGTTTTAA

Predicted protein sequences of Glyma06g02430

Limit To All Plant Sequences

>Glyma06g02430.1   sequence type=predicted peptide   gene model=Glyma06g02430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVLVSFLVLCCFTISNCGFSPSGWNSAHATFYGGIDASGTNGGACGYGNIFSATGYGTDTTALSTALFNNGASCGECYKITCDYRTDPKWCLKGKSVIVTATNFCPPNLSLSPNKGGWCNPPLKHFDMSQPAWEKIAIYRGGIVPVFYQRVPCARQGGVRFTMNGNNYFELVLITNVGGAGSIKSVYIKGSKTGWMAMTRNWGENWQSNEYLNGQSLSFKVTTTDGVTRLFRGVVPANWAFGQTFPTRVQF*

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