SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20200 | AT | Annotation by Michelle Graham. TAIR10: PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042176 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein catabolic process | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008541 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0030234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity | SoyBase | N/A | ISS |
| KOG2581 | KOG | 26S proteasome regulatory complex, subunit RPN3/PSMD3 | JGI | ISS | |
| PTHR10758 | Panther | 26S PROTEASOME REGULATORY SUBUNIT S3 | JGI | ISS | |
| PTHR10758:SF2 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 | JGI | ISS | |
| PF01399 | PFAM | PCI domain | JGI | ISS | |
| PF08375 | PFAM | Proteasome regulatory subunit C-terminal | JGI | ISS | |
| UniRef100_G7J5U6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7J5U6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K7H0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1K7H0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g02410 not represented in the dataset |
Glyma06g02410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g02370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g021600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g02410.2 sequence type=transcript gene model=Glyma06g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTGACTGTAGTCTGTAGAGGACATGTGCCAGTTGTGCGACCATATTGCTTCCAATTTGGTCTTCTTCACCCTCTTAGGGTTTGCATCAGATTCCCCTAATTCTTGCTTGATTTTGCGCTTTCGCTAGATTTTCTTCAAAATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCGTAAGCATATAGTATCTTTCTCTAACCACTTCCACTGTGCCGATTTCGCATTTTCACAAAACTATTCCAGCTTTTCGCTCTTTATTTTTTCTTTTCTTTGCTATTTGGATTTGCAGATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGATAATTGTTTTTTTTCACCCTATGAATTGCTATCTGGATACCTTCATTTCCAACGTTTGCTCATCTTTTCCTTTTGAAGAACTTTCATTATCATTTCCTTTTTCAAAAAGTGAATTTTTCATTTCCTAAGTGGAAGATCTCTGAAAGTCAGTTTAACATATCGAAATATTTACTTTTTTTTTTCATCCATGATGACTGCTATGGTTTGTTCCTTGTTAGGAGAATTATGTTTTAGGACCTGAAGAAAAAAAAATCAAATATTTAGGACGATGCGAATTCTGTTCAGAAGTTTTATTATTAGAAACTGTTACCCTGGAGGATTTATTGAATTATAGCATGACAATCTATTTTTCTGTCAAGAACGATTCATTTTCTTTGTGCCCCGAGATGAAATCCTTCCTTATGCATGTGTAGATGGGGATTTTATGTAAACGTATTAGGGCT
>Glyma06g02410.1 sequence type=CDS gene model=Glyma06g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA >Glyma06g02410.2 sequence type=CDS gene model=Glyma06g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA
>Glyma06g02410.1 sequence type=predicted peptide gene model=Glyma06g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQDLEMKDRSTPSNSVSSPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDHVLTPGSEVHAKLSAYLPKDDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* >Glyma06g02410.2 sequence type=predicted peptide gene model=Glyma06g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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