Glyma06g02410 - SoyBase

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Report for Sequence Feature Glyma06g02410

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1611913
stop:	1615398
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20200	AT	Annotation by Michelle Graham. TAIR10: PAM domain (PCI/PINT associated module) protein \| chr1:7001409-7004154 REVERSE LENGTH=488	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0042176	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008541	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0030234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity	SoyBase	N/A	ISS
KOG2581	KOG	26S proteasome regulatory complex, subunit RPN3/PSMD3	JGI		ISS
PTHR10758	Panther	26S PROTEASOME REGULATORY SUBUNIT S3	JGI		ISS
PTHR10758:SF2	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3	JGI		ISS
PF01399	PFAM	PCI domain	JGI		ISS
PF08375	PFAM	Proteasome regulatory subunit C-terminal	JGI		ISS
UniRef100_G7J5U6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7J5U6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7H0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1K7H0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02410

Paralog	Evidence	Comments
Glyma04g02370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g021600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02410

Limit To All Plant Sequences

>Glyma06g02410.2   sequence type=transcript   gene model=Glyma06g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGACTGTAGTCTGTAGAGGACATGTGCCAGTTGTGCGACCATATTGCTTCCAATTTGGTCTTCTTCACCCTCTTAGGGTTTGCATCAGATTCCCCTAATTCTTGCTTGATTTTGCGCTTTCGCTAGATTTTCTTCAAAATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCGTAAGCATATAGTATCTTTCTCTAACCACTTCCACTGTGCCGATTTCGCATTTTCACAAAACTATTCCAGCTTTTCGCTCTTTATTTTTTCTTTTCTTTGCTATTTGGATTTGCAGATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGATAATTGTTTTTTTTCACCCTATGAATTGCTATCTGGATACCTTCATTTCCAACGTTTGCTCATCTTTTCCTTTTGAAGAACTTTCATTATCATTTCCTTTTTCAAAAAGTGAATTTTTCATTTCCTAAGTGGAAGATCTCTGAAAGTCAGTTTAACATATCGAAATATTTACTTTTTTTTTTCATCCATGATGACTGCTATGGTTTGTTCCTTGTTAGGAGAATTATGTTTTAGGACCTGAAGAAAAAAAAATCAAATATTTAGGACGATGCGAATTCTGTTCAGAAGTTTTATTATTAGAAACTGTTACCCTGGAGGATTTATTGAATTATAGCATGACAATCTATTTTTCTGTCAAGAACGATTCATTTTCTTTGTGCCCCGAGATGAAATCCTTCCTTATGCATGTGTAGATGGGGATTTTATGTAAACGTATTAGGGCT

Coding sequences of Glyma06g02410

Limit To All Plant Sequences

>Glyma06g02410.1   sequence type=CDS   gene model=Glyma06g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA

>Glyma06g02410.2   sequence type=CDS   gene model=Glyma06g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA

Predicted protein sequences of Glyma06g02410

Limit To All Plant Sequences

>Glyma06g02410.1   sequence type=predicted peptide   gene model=Glyma06g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQDLEMKDRSTPSNSVSSPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDHVLTPGSEVHAKLSAYLPKDDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*

>Glyma06g02410.2   sequence type=predicted peptide   gene model=Glyma06g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*

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