Glyma06g02390 - SoyBase

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Report for Sequence Feature Glyma06g02390

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1596844
stop:	1600773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42200	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:16860523-16861014 FORWARD LENGTH=163	SoyBase	E_val: 2.00E-50	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22764	Panther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7J5U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL5J n=1 Tax=Medicago truncatula RepID=G7J5U8_MEDTR	SoyBase	E_val: 1.00E-61	ISS
UniRef100_I1K7G8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7G8_SOYBN	SoyBase	E_val: 5.00E-90	ISS

Expression Patterns of Glyma06g02390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02390

Paralog	Evidence	Comments
Glyma04g02340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g021400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02390

Limit To All Plant Sequences

>Glyma06g02390.1   sequence type=CDS   gene model=Glyma06g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGATTCGGTTCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTATGGTACGCCACTACCCGCCGCAACCAACCCCCCATTGACGGTCAACCGGTGAAGCCCGTAACTGATAAGGGTCTATCCGCTTTGGAGTTGGAGAAGCTTCCAAAAATCACCGGCAAAGAACTCGTCTTGGGCACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGAGTGGTCCCCGGTTGCAACCATGGATTTCATGTCCAATGCGCTGACACCTGGCTCTCTAAGCACCCTATTTGCCCCGTTTGTAGGACCAAGCTGGACCCGCAAATCTTCACTTCCCAAAGCCCCTGCTGA

Predicted protein sequences of Glyma06g02390

Limit To All Plant Sequences

>Glyma06g02390.1   sequence type=predicted peptide   gene model=Glyma06g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRRNQPPIDGQPVKPVTDKGLSALELEKLPKITGKELVLGTECAVCLDEIESEQPARVVPGCNHGFHVQCADTWLSKHPICPVCRTKLDPQIFTSQSPC*

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