Glyma06g02380 - SoyBase

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Report for Sequence Feature Glyma06g02380

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1582191
stop:	1589600
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60420	AT	Annotation by Michelle Graham. TAIR10: DC1 domain-containing protein \| chr1:22261978-22264243 FORWARD LENGTH=578	SoyBase	E_val: 8.00E-95	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010183	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube guidance	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080092	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016209	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antioxidant activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0047134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-disulfide reductase activity	SoyBase	N/A	ISS
KOG2501	KOG	Thioredoxin, nucleoredoxin and related proteins	JGI		ISS
PTHR13871	Panther	THIOREDOXIN	JGI		ISS
PTHR13871:SF2	Panther	THIOREDOXIN - RELATED	JGI		ISS
PF00578	PFAM	AhpC/TSA family	JGI		ISS
UniRef100_G7J5V1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleoredoxin n=1 Tax=Medicago truncatula RepID=G7J5V1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7G6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7G6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02380

Paralog	Evidence	Comments
Glyma04g02330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g021200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02380

Limit To All Plant Sequences

>Glyma06g02380.2   sequence type=transcript   gene model=Glyma06g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTTGCCAGAAGATAGCAAAACTAATAATAACACTCCTTTCAGGGAATCACCACCATACACGTGACCATTTTCTTTTCGCTTGACTCGAACATAAGTTAAGTCAAGGCGCACATGGATGAGATCGCGACAATCAAAATGAAGCACCATCATTCTCTATGTGTGTGCGGTGTAGGTTGGTATTATCCTGGGGCTTGGATGAATGCTACGTGTGAAGGTGTTGATGTGTGATTTGTGGATGCATAGGATGTAATAATGATGTGGAAAGAATATGATTCTACTTCTAATGAATATAAGTGTCGGGTGTATAAGGGGTCTTCTACTCCTCTCGCGGTGCTTTCATCTCTAGATTAGTACTCAGACCTTATAAAAAAGAAAGAATAAGAGAGAGAAAGCGGAGATGAAGGATGGAGCCCAAGTTGTGCTGAATGATAATGGTAACTACGGCAAATTCTCACACCTACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCGAATTGGTACCCACCATGCCGTGGATTCACCCAAATCCTAGTTGGAATCTACGAGGAGCTGAAAAGCAGAGTCCCTCAATTGGAGATTGTGTATGTGTCCTCTGATGAAAACTTGGATGCCTTTAATAGCTTCTATGGAAACATGCCGTGGCTTGCAATTCCGTTCTCCGATTTGGAAACAAAGAAATCCTTGACCAGAAAGTACGACGTGGAAGCCGTTCCGTGCTTAATTTTGTTGCAACCTGATGATCGTAAAGAGCACGTAACAGTTCGTGACGGGGTTGAACTTATTTACCGTTACGGAATCCAAGCTTATCCATTCAGTAACGAGAGGTTGGAGCAGCTGCAAAAGGAAGACAAAGTGAAGCGTGATAATCAGACTCTCACTAATTTACTAGCAAACCACCATAGAGACTATGTTTTGAGTCACACTCACACGGGACTCAAAAAGGTACCTGTTGCTTGGCTAGTGGGTAAAACAATTGGACTCTACTTCTCAGCGGAATGGTGCGTCCCATGCGCCAAGTTCACTCCAAAACTGATTTCTGTTTACGAGAAGATAAAGCACGAGCTAGCCGGAAAGGGAGAGGAAGACTTCGAAGTTGTGCTAATATCCAGCGACCGCGACCAAGCATCCTTTGACTCCTACTACAGCACCATGCCTTGGTTAGCCTTACCTTTCGGTGACCCAGAAATCAAGAACCTCGTTAGACACTACAACGTGCAAGGGATTCCCTGGTTGGTGATCATAGGCCCTGATGGTAAAACAATAACCGTACATGGCAGGAGTTTGATAAACTTGTACCAAGAAAATGCGTACCCTTTCACCAACGCCAAAGTGGAGGAGCTGGAGAAACAGCTTGAGGAAGAGGCCAAGGGTCTTCCGGCATTGGTGTATCATGAAGGGCACCGCCATGATCTGAATTTGGTGTCTGATGGAAACGGTGGAGGGCCCTTTATTTGCTGCGTATGTGATGAGCAAGGGTCTAGTTGGGCCTACCAGTGTCTCCAATGTGGCTATGAAGTGCACCCAAAGTGCGTCAGAACTGTGGAACGTCATGACAATAATGTCTAGGAATTTTTTAATTAAATTCCTGTGGCAATTAATTCTATATCCTGTGTTACCGTCCAAGAGGGGCGATAACTTGACTTGGCTGTATCCTAATCTGCACCAGGGAAGGGACTGGAATGCCCTTTAGATAAATTAGATTACGTATCTTTATGGTGCTTTTCTACTTGTTCAGAATATGTGTGACTGAGAGTCATAAGAAGGAAAGGTGATACTTGGGGAATCATCTATTTGGTTCTCCATAGCTTTTAAGAAAAACTGTTGTTACTTGTTCGTTATCAAGTGTCTTTCTATAACTAACAATGACAATAAAATTTATAGTACGTACTGTATTTGATATGTTTAAAAGTGAACAAGTTGCATTGTTCGTTGATATTGGTCAATATATGGTCATGATGCATGTATCTGTAATCATCTTGGAAATTTTATTTCTGCGAAAACAAG

Coding sequences of Glyma06g02380

Limit To All Plant Sequences

>Glyma06g02380.1   sequence type=CDS   gene model=Glyma06g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATGGAGCCCAAGTTGTGCTGAATGATAATGGTAACTACGGCAAATTCTCACACCTACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCGAATTGGTACCCACCATGCCGTGGATTCACCCAAATCCTAGTTGGAATCTACGAGGAGCTGAAAAGCAGAGTCCCTCAATTGGAGATTGTGTATGTGTCCTCTGATGAAAACTTGGATGCCTTTAATAGCTTCTATGGAAACATGCCGTGGCTTGCAATTCCGTTCTCCGATTTGGAAACAAAGAAATCCTTGACCAGAAAGTACGACGTGGAAGCCGTTCCGTGCTTAATTTTGTTGCAACCTGATGATCGTAAAGAGCACGTAACAGTTCGTGACGGGGTTGAACTTATTTACCGTTACGGAATCCAAGCTTATCCATTCAGTAACGAGAGGTTGGAGCAGCTGCAAAAGGAAGACAAAGTGAAGCGTGATAATCAGACTCTCACTAATTTACTAGCAAACCACCATAGAGACTATGTTTTGAGTCACACTCACACGGGACTCAAAAAGTTTTATTTGAACTGCATGCAGAGAATCATGGATCCTGTTCCGGGTGACGGGTGTTGCTCATGTACACAGGTACCTGTTGCTTGGCTAGTGGGTAAAACAATTGGACTCTACTTCTCAGCGGAATGGTGCGTCCCATGCGCCAAGTTCACTCCAAAACTGATTTCTGTTTACGAGAAGATAAAGCACGAGCTAGCCGGAAAGGGAGAGGAAGACTTCGAAGTTGTGCTAATATCCAGCGACCGCGACCAAGCATCCTTTGACTCCTACTACAGCACCATGCCTTGGTTAGCCTTACCTTTCGGTGACCCAGAAATCAAGAACCTCGTTAGACACTACAACGTGCAAGGGATTCCCTGGTTGGTGATCATAGGCCCTGATGGTAAAACAATAACCGTACATGGCAGGAGTTTGATAAACTTGTACCAAGAAAATGCGTACCCTTTCACCAACGCCAAAGTGGAGGAGCTGGAGAAACAGCTTGAGGAAGAGGCCAAGGGTCTTCCGGCATTGGTGTATCATGAAGGGCACCGCCATGATCTGAATTTGGTGTCTGATGGAAACGGTGGAGGGCCCTTTATTTGCTGCGTATGTGATGAGCAAGGGTCTAGTTGGGCCTACCAGTGTCTCCAATGTGGCTATGAAGTGCACCCAAAGTGCGTCAGAACTGTGGAACGTCATGACAATAATGTCTAG

>Glyma06g02380.2   sequence type=CDS   gene model=Glyma06g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATGGAGCCCAAGTTGTGCTGAATGATAATGGTAACTACGGCAAATTCTCACACCTACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCGAATTGGTACCCACCATGCCGTGGATTCACCCAAATCCTAGTTGGAATCTACGAGGAGCTGAAAAGCAGAGTCCCTCAATTGGAGATTGTGTATGTGTCCTCTGATGAAAACTTGGATGCCTTTAATAGCTTCTATGGAAACATGCCGTGGCTTGCAATTCCGTTCTCCGATTTGGAAACAAAGAAATCCTTGACCAGAAAGTACGACGTGGAAGCCGTTCCGTGCTTAATTTTGTTGCAACCTGATGATCGTAAAGAGCACGTAACAGTTCGTGACGGGGTTGAACTTATTTACCGTTACGGAATCCAAGCTTATCCATTCAGTAACGAGAGGTTGGAGCAGCTGCAAAAGGAAGACAAAGTGAAGCGTGATAATCAGACTCTCACTAATTTACTAGCAAACCACCATAGAGACTATGTTTTGAGTCACACTCACACGGGACTCAAAAAGGTACCTGTTGCTTGGCTAGTGGGTAAAACAATTGGACTCTACTTCTCAGCGGAATGGTGCGTCCCATGCGCCAAGTTCACTCCAAAACTGATTTCTGTTTACGAGAAGATAAAGCACGAGCTAGCCGGAAAGGGAGAGGAAGACTTCGAAGTTGTGCTAATATCCAGCGACCGCGACCAAGCATCCTTTGACTCCTACTACAGCACCATGCCTTGGTTAGCCTTACCTTTCGGTGACCCAGAAATCAAGAACCTCGTTAGACACTACAACGTGCAAGGGATTCCCTGGTTGGTGATCATAGGCCCTGATGGTAAAACAATAACCGTACATGGCAGGAGTTTGATAAACTTGTACCAAGAAAATGCGTACCCTTTCACCAACGCCAAAGTGGAGGAGCTGGAGAAACAGCTTGAGGAAGAGGCCAAGGGTCTTCCGGCATTGGTGTATCATGAAGGGCACCGCCATGATCTGAATTTGGTGTCTGATGGAAACGGTGGAGGGCCCTTTATTTGCTGCGTATGTGATGAGCAAGGGTCTAGTTGGGCCTACCAGTGTCTCCAATGTGGCTATGAAGTGCACCCAAAGTGCGTCAGAACTGTGGAACGTCATGACAATAATGTCTAG

Predicted protein sequences of Glyma06g02380

Limit To All Plant Sequences

>Glyma06g02380.1   sequence type=predicted peptide   gene model=Glyma06g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDGAQVVLNDNGNYGKFSHLLASQDRDYLLSPTGAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDAFNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRYGIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKFYLNCMQRIMDPVPGDGCCSCTQVPVAWLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGEEDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVERHDNNV*

>Glyma06g02380.2   sequence type=predicted peptide   gene model=Glyma06g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDGAQVVLNDNGNYGKFSHLLASQDRDYLLSPTGAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDAFNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRYGIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVAWLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGEEDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVERHDNNV*

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