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Report for Sequence Feature Glyma06g02366

Feature Type:gene_model
Chromosome:Gm06
Start:1576171
stop:1576554
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02366
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76050AT Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein | chr1:28540858-28542826 FORWARD LENGTH=430 SoyBaseE_val: 8.00E-35ISS
GO:0001522GO-bp Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis SoyBaseN/AISS
GO:0009451GO-bp Annotation by Michelle Graham. GO Biological Process: RNA modification SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0009982GO-mf Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity SoyBaseN/AISS
PTHR10436Panther RIBOSOMAL PSEUDOURIDINE SYNTHASE JGI ISS
PTHR10436:SF39Panther RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D JGI ISS
UniRef100_G7J5V2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA pseudourine synthase n=1 Tax=Medicago truncatula RepID=G7J5V2_MEDTR SoyBaseE_val: 2.00E-48ISS
UniRef100_UPI00023398D4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023398D4 related cluster n=1 Tax=unknown RepID=UPI00023398D4 SoyBaseE_val: 6.00E-66ISS

Expression Patterns of Glyma06g02366
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g02366 not represented in the dataset
Glyma06g02366 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g02366 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g02366
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02366
>Glyma06g02366.1   sequence type=CDS   gene model=Glyma06g02366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCGCACCTATGCTAAGTATTTGGGAGTTCCTCTACTGGGTGATGAGGTGTATGGAGGGACAAAAAACATGGTCTTCTCACTGCTAAGGCCCCGAACTCCCATCAGTTTGCATAGCAAAGTTGTAAAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGCAGACTTCGCTGAGATCTTGAGCCAGCTTCGTAGAATTGGTAGTGAGACCGTTTCTTTCTCAAAGCGTTCAAATTTATGA
Predicted protein sequences of Glyma06g02366
>Glyma06g02366.1   sequence type=predicted peptide   gene model=Glyma06g02366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IRTYAKYLGVPLLGDEVYGGTKNMVFSLLRPRTPISLHSKVVKMVSRLDRPCLHALTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVSFSKRSNL*






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