Glyma06g02360 - SoyBase

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Report for Sequence Feature Glyma06g02360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1567298
stop:	1571271
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20270	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:7021383-7022923 REVERSE LENGTH=287	SoyBase	E_val: 1.00E-163	ISS
GO:0018401	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0031418	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbic acid binding	SoyBase	N/A	ISS
KOG1591	KOG	Prolyl 4-hydroxylase alpha subunit	JGI		ISS
PTHR10869	Panther	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7J5W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prolyl 4-hydroxylase alpha-2 subunit n=2 Tax=Medicago truncatula RepID=G7J5W0_MEDTR	SoyBase	E_val: 9.00E-171	ISS
UniRef100_I1K7G3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7G3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02360

Paralog	Evidence	Comments
Glyma04g02300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g021000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02360

Limit To All Plant Sequences

>Glyma06g02360.3   sequence type=transcript   gene model=Glyma06g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGGTCACAGTCACACCACACCGGCAAATATTTTGGTAAGTAAAGAAAAGAATAGTGGCTGGAGTCAACGAAATCGTGACGACACCATTCGAAGGACTTGTTTGTTTAACTACGACTGAGTATATCGTAATTCGTTCGTCCATTAGCATTGCTTAGGGTTTTGGAACAGATTCAATTCAGCGTTACTTCAATCCAAGCACATGGCGAAAGGAAAGCATACGCATACCCGAGCACAGGGGAAGAAGTGGTCAACGTTCTCGCTGGTTCTGTGGGCGCTTTTCTTCCTCACACTCATCCTCGTCGTGCTCCTTGCTCTCGGCATTGTTTATCTTCCAACTACCGACGACGATTTTCCAACCACGGATCTCAGCGCCTTCAGGCGCAAGACCTCTCAAAGTGCCGAGAGTTTGGTGGAAAATCCGCCGGAGCAGTGGACCGAGATTCTCTCCTGGGAGCCTAGAGCGTTCATCTATCACAATTTTCTGTCAAAAGAAGAATGTGAGTACTTGATTGAACTTGCCAAACCTCAAATGGTAAAATCAAGTGTTGTTGATAGCAAGACTGGGAAGAGTACAGAAAGCAGGGTTCGAACCAGTTCAGGAATGTTCTTGAAGAGAGGAAAGGACAAAATTGTCCAGAATATAGAGAAAAGAATTGCTGACTTTACCTTCATACCTGAAGAGAATGGAGAAGGACTTCAAATTCTTCACTACGAAGTAGGACAAAAATATGAGCCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGCGGTGAGACTGTATTTCCGGCTGCCAATGCAAATTTTAGTTCTGTGCCTTGGTGGAATGATTTATCCCAATGTGCAAGAAAGGGTCTCTCAGTGAAACCAAAAATGGGTGATGCTCTGCTATTTTGGAGCATGAGGCCTGATGCCACACTAGATCCATCTAGTTTACATGGTGGTTGCCCAGTAATTAAAGGAAATAAATGGTCTTCAACAAAGTGGATGCATCTTCGTGAGTACAAGGTTTGACCCATCAACTGCACAGGATTAACGTGGTACAGGGTGAGTATTTCATCACATTTTGGATTGGATAAACACAAGTTCAGTGCATTTCATGTTCACCTTTTATGCTACCTAGTGATGTTCCCCTTTGCTCAGGTGCGCCAGCATTTTCTTCACTTGTAGAATAAACCATTTGGTTTCTCTTTCTCATGGATAGACAATTTTGGCATTGCCAAGGGAAAAAAGAATACTTTCAGTTAATGATCTGAGTTTTAGTCTTGTAGAGTTTTCAAGCGAATATGTCTATTAGGTAAGAGGCTCACCAGGGAGTGATGTGTTGAATACAAGTAGAGATAAATTTGCAATTTACTGGGGAGTGATGTGTTGAATACAAGTAGAGATAAATTTGCAATTTAGCATAGTGAAAGGATGGTATGTTGGTCATAGATAAGTTTTTGAGAATGTGCTATATTTCACAGAAGTAAGAAAAACAATAATTTTTTTAGTTTGTACAGAAGTTCCCCCCTCCAGTGTTCGTGTAATTATTTTTATTATTCAACCATGTGTTGTTTCTTCGTTTAAATAGTCCATGTTTATGTCATTATTATAGTCTATCTCATTTGATTATATGACTATAATGTGTGGTATAATGATAGTTTTGCAGTTACAATTATTAAAATC

Coding sequences of Glyma06g02360

Limit To All Plant Sequences

>Glyma06g02360.2   sequence type=CDS   gene model=Glyma06g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGGAAAGCATACGCATACCCGAGCACAGGGGAAGAAGTGGTCAACGTTCTCGCTGGTTCTGTGGGCGCTTTTCTTCCTCACACTCATCCTCGTCGTGCTCCTTGCTCTCGGCATTGTTTATCTTCCAACTACCGACGACGATTTTCCAACCACGGATCTCAGCGCCTTCAGGCGCAAGACCTCTCAAAGTGCCGAGAGTTTGGTGGAAAATCCGCCGGAGCAGTGGACCGAGATTCTCTCCTGGGAGCCTAGAGCGTTCATCTATCACAATTTTCTGTCAAAAGAAGAATGTGAGTACTTGATTGAACTTGCCAAACCTCAAATGGTAAAATCAAGTGTTGTTGATAGCAAGACTGGGAAGAGTACAGAAAGCAGGGTTCGAACCAGTTCAGGAATGTTCTTGAAGAGAGGAAAGGACAAAATTGTCCAGAATATAGAGAAAAGAATTGCTGACTTTACCTTCATACCTGAAGAGAATGGAGAAGGACTTCAAATTCTTCACTACGAAGTAGGACAAAAATATGAGCCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGCGGTGAGACTGTATTTCCGGCTGCCAATGCAAATTTTAGTTCTGTGCCTTGGTGGAATGATTTATCCCAATGTGCAAGAAAGGGTCTCTCAGTGAAACCAAAAATGGGTGATGCTCTGCTATTTTGGAGCATGAGGCCTGATGCCACACTAGATCCATCTAGTTTACATGGTGGTTGCCCAGTAATTAAAGGAAATAAATGGTCTTCAACAAAGTGGATGCATCTTCGTGAGTACAAGGTTTGA

>Glyma06g02360.3   sequence type=CDS   gene model=Glyma06g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGGAAAGCATACGCATACCCGAGCACAGGGGAAGAAGTGGTCAACGTTCTCGCTGGTTCTGTGGGCGCTTTTCTTCCTCACACTCATCCTCGTCGTGCTCCTTGCTCTCGGCATTGTTTATCTTCCAACTACCGACGACGATTTTCCAACCACGGATCTCAGCGCCTTCAGGCGCAAGACCTCTCAAAGTGCCGAGAGTTTGGTGGAAAATCCGCCGGAGCAGTGGACCGAGATTCTCTCCTGGGAGCCTAGAGCGTTCATCTATCACAATTTTCTGTCAAAAGAAGAATGTGAGTACTTGATTGAACTTGCCAAACCTCAAATGGTAAAATCAAGTGTTGTTGATAGCAAGACTGGGAAGAGTACAGAAAGCAGGGTTCGAACCAGTTCAGGAATGTTCTTGAAGAGAGGAAAGGACAAAATTGTCCAGAATATAGAGAAAAGAATTGCTGACTTTACCTTCATACCTGAAGAGAATGGAGAAGGACTTCAAATTCTTCACTACGAAGTAGGACAAAAATATGAGCCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGCGGTGAGACTGTATTTCCGGCTGCCAATGCAAATTTTAGTTCTGTGCCTTGGTGGAATGATTTATCCCAATGTGCAAGAAAGGGTCTCTCAGTGAAACCAAAAATGGGTGATGCTCTGCTATTTTGGAGCATGAGGCCTGATGCCACACTAGATCCATCTAGTTTACATGGTGGTTGCCCAGTAATTAAAGGAAATAAATGGTCTTCAACAAAGTGGATGCATCTTCGTGAGTACAAGGTTTGA

Predicted protein sequences of Glyma06g02360

Limit To All Plant Sequences

>Glyma06g02360.2   sequence type=predicted peptide   gene model=Glyma06g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGKHTHTRAQGKKWSTFSLVLWALFFLTLILVVLLALGIVYLPTTDDDFPTTDLSAFRRKTSQSAESLVENPPEQWTEILSWEPRAFIYHNFLSKEECEYLIELAKPQMVKSSVVDSKTGKSTESRVRTSSGMFLKRGKDKIVQNIEKRIADFTFIPEENGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVEEGGETVFPAANANFSSVPWWNDLSQCARKGLSVKPKMGDALLFWSMRPDATLDPSSLHGGCPVIKGNKWSSTKWMHLREYKV*

>Glyma06g02360.3   sequence type=predicted peptide   gene model=Glyma06g02360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGKHTHTRAQGKKWSTFSLVLWALFFLTLILVVLLALGIVYLPTTDDDFPTTDLSAFRRKTSQSAESLVENPPEQWTEILSWEPRAFIYHNFLSKEECEYLIELAKPQMVKSSVVDSKTGKSTESRVRTSSGMFLKRGKDKIVQNIEKRIADFTFIPEENGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVEEGGETVFPAANANFSSVPWWNDLSQCARKGLSVKPKMGDALLFWSMRPDATLDPSSLHGGCPVIKGNKWSSTKWMHLREYKV*

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