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Report for Sequence Feature Glyma06g02340

Feature Type:gene_model
Chromosome:Gm06
Start:1560532
stop:1561576
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76070AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCB SoyBaseE_val: 1.00E-31ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7G1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7G1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8S901UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein 14-1-1 n=1 Tax=Glycine max RepID=Q8S901_SOYBN SoyBaseE_val: 5.00E-129ISS

Expression Patterns of Glyma06g02340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02340
ParalogEvidenceComments
Glyma04g02280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g020800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02340
>Glyma06g02340.1   sequence type=CDS   gene model=Glyma06g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCTGCTTATAGGATGAAGAGCAAAATCTTGAAGGCACTGCCAAAAGCAGTTTCAGCAGTCACGGTGACATTTCAAAACCATCCATTCAGCCCAGGCAGGGACCACAAATCAAAGCCTATCGTATCCATGATTCCCCATGAAGCTAGAAGAAAAACCCATGATAGAGGCAATAATAACGACATTGATGAAATTTATTCTCAAGAACCCACTTCACCGAAAATCTCCTGCATGGGACAGATCAAGCACAAGAAGAAACAAATCGAAAAATCAAAGTCCAAGAGCAAGTCCATGACAAAAGAAGCGAGGAATGTTGCTAGCAAACAAACATCCTCAGCTTCCAGAGACATAGAGGTAAAAAATCACGTTTCGACGTTTCAAAAGATGTTATTATTCCATGGGACAAAGCCAAAGTCTGATGGAAGGAAATCCAACGCTTCTGCGCCTGGAGATATTAACAAGGATCGTGCTCTTGCTGACGCAGCACGTGCACCGCGCGTGAGTCAGATGAGAAGGTTTTCAAGTGGACGTGACGCTCTTGGTGATTTTGATTGGAAGGTGGCTCAGGTGGCGCCAGATGAAGAGGAAATTGATTACTATTCGGATCATTACAGAGTGGATAGTGATGGCGATGAAGAGGAACAGATTATTATCCCTTTTTCTGCACCCCTTTTGGTTGGTGTTGGAGTTGGTCATGGGGGTGTGCTTAATTTGAAGCCACGAATAGAAATTAACCTGTGGAAGAGAAGAACCATGGCTCCACCTAGGCCTCTTCAATTGGACAGAGCAAACTGA
Predicted protein sequences of Glyma06g02340
>Glyma06g02340.1   sequence type=predicted peptide   gene model=Glyma06g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHAAYRMKSKILKALPKAVSAVTVTFQNHPFSPGRDHKSKPIVSMIPHEARRKTHDRGNNNDIDEIYSQEPTSPKISCMGQIKHKKKQIEKSKSKSKSMTKEARNVASKQTSSASRDIEVKNHVSTFQKMLLFHGTKPKSDGRKSNASAPGDINKDRALADAARAPRVSQMRRFSSGRDALGDFDWKVAQVAPDEEEIDYYSDHYRVDSDGDEEEQIIIPFSAPLLVGVGVGHGGVLNLKPRIEINLWKRRTMAPPRPLQLDRAN*






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