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Report for Sequence Feature Glyma06g02230

Feature Type:gene_model
Chromosome:Gm06
Start:1471859
stop:1472831
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20430AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7083471-7083821 REVERSE LENGTH=116 SoyBaseE_val: 1.00E-31ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7F3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K7F3_SOYBN SoyBaseE_val: 3.00E-72ISS
UniRef100_Q9LMV4UniRef Annotation by Michelle Graham. Most informative UniRef hit: F5M15.23 n=1 Tax=Arabidopsis thaliana RepID=Q9LMV4_ARATH SoyBaseE_val: 3.00E-14ISS

Expression Patterns of Glyma06g02230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02230
ParalogEvidenceComments
Glyma04g02130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g019700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02230
>Glyma06g02230.1   sequence type=CDS   gene model=Glyma06g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGTCTTCAGCTTCTCCTCGACCGAGCGCCGCCGCGGAACATTCGAAGAGGATATTAGGGTTTATGGCGCACGCGAAGCAACGGAAGGACAGCTTCATTCAATTCTTCGCCATGACGGGTATCCTTCTATTGAGCATGCGATCTTTGAGCCAGAAGTACAAAATCCACGGCCTCCAAGAAGATATCCACGCCCTCAGGGTCGAGCACGATTCCCTCACCGACCGCATCAACAACATCAAGAACGACCTCCTTCGAGAAGCTTCTCATGACCCCACCGGCCTCTTCGCTTCTCGCCTTCGCCACCTCTTTGCCGAACAACACTGA
Predicted protein sequences of Glyma06g02230
>Glyma06g02230.1   sequence type=predicted peptide   gene model=Glyma06g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSASPRPSAAAEHSKRILGFMAHAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSLTDRINNIKNDLLREASHDPTGLFASRLRHLFAEQH*






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