Glyma06g02200 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g02200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1454110
stop:	1458215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42270	AT	Annotation by Michelle Graham. TAIR10: FtsH extracellular protease family \| chr5:16902659-16905102 FORWARD LENGTH=704	SoyBase	E_val: 0	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0010205	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoinhibition	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0731	KOG	AAA+-type ATPase containing the peptidase M41 domain	JGI		ISS
PTHR23076	Panther	METALLOPROTEASE M41 FTSH	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF01434	PFAM	Peptidase family M41	JGI		ISS
UniRef100_B9GQ31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Precursor of protein cell division protease ftsh-like protein n=1 Tax=Populus trichocarpa RepID=B9GQ31_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7F0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7F0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02200

Paralog	Evidence	Comments
Glyma04g02100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g019400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02200

Limit To All Plant Sequences

>Glyma06g02200.1   sequence type=CDS   gene model=Glyma06g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCGCCACCAGCGCCTTGGTTTGTTCAAACTTGCTCGGAAGGAAGGTTCTAGTCACAAGCAAATCATCCACTCCACTACCATTTCTTTTCAAGAGAAGCATCTTAAAAGCTCAGAATTCAGAGCAAGTCAAATCCGCATCTTCACGGGCTGCTCTAGCTGCACTTATCGTCTCCTCCGCGAGCCTCTCTGTGACCCCAGAAGCCCTAGCCGCTGATAACTTGACCCCTCCCCCCGTGATTGAAGCGCAACAGAGCCAACCCTCATCCCCTTTCTCACAGAACCTCCTCCTCACTGCGCCTAAGCCCCAATCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGCTACAGCGACTTCTTAAACGCCGTCAAGAAGGGTAAGGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCTGCCCTCCAACTAACCGCGGTTGACGGCCGTCGCGCCTCCGTTATTGTCCCCAATGACCCGGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCGGAAGGCGAATCCCCCAACAGCTTGTTCAACATCGTTGGCAACTTGCTCTTCCCCTTGCTCGCGTTCGCGGGTTTGTTCTTCCTCTTCCGGAGAGCTCAAGGCGGGCCCGGTGGGCCTGGCGGGATGGGTGGGCCCATGGACTTTGGACGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAAACCGGTGTGAGCTTCGCTGACGTTGCGGGCGCGGACCAAGCGAAGCTTGAGCTCCAAGAGGTTGTTGATTTCTTGAAGAATCCCGATAAGTACACCGCGTTGGGCGCGAAGATTCCGAAGGGGTGTCTTTTGGTGGGGCCACCGGGAACCGGAAAGACCCTTCTGGCGAGGGCGGTGGCGGGAGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTGGAGCTTTTCGTGGGGGTTGGTGCTTCGAGGGTGAGGGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTAGGAGGTGGAAATGATGAGAGGGAACAAACTATTAATCAGCTTCTTACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATTGCTAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATTTGATGAATGAGGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCCGAGAAGAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCTTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTGAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACACATATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCTGAATTATATGTTGCATAA

Predicted protein sequences of Glyma06g02200

Limit To All Plant Sequences

>Glyma06g02200.1   sequence type=predicted peptide   gene model=Glyma06g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFATSALVCSNLLGRKVLVTSKSSTPLPFLFKRSILKAQNSEQVKSASSRAALAALIVSSASLSVTPEALAADNLTPPPVIEAQQSQPSSPFSQNLLLTAPKPQSSSDLPEGTNWRYSDFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIVGNLLFPLLAFAGLFFLFRRAQGGPGGPGGMGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYSRATHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain