SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35240 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) | chr4:16761334-16764324 REVERSE LENGTH=865 | SoyBase | E_val: 1.00E-111 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR21450 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04782 | PFAM | Protein of unknown function (DUF632) | JGI | ISS | |
| PF04783 | PFAM | Protein of unknown function (DUF630) | JGI | ISS | |
| UniRef100_G7KFE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP107 n=1 Tax=Medicago truncatula RepID=G7KFE1_MEDTR | SoyBase | E_val: 2.00E-112 | ISS |
| UniRef100_UPI0002339777 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339777 related cluster n=1 Tax=unknown RepID=UPI0002339777 | SoyBase | E_val: 0 | ISS |
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Glyma06g02181 not represented in the dataset |
Glyma06g02181 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g02080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g019200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g02181.1 sequence type=CDS gene model=Glyma06g02181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCTGCAACACCTCGAGACTTGACCGGCTACCGGCGGTGGCCCTGTGCCGTGACCGTTGCAAGTTCGTGGACGAAGCGCTTCGGCAAAGCTACGCCCTCGCTGACGCCCACGTGGCACACATGGAGGCCCTGAAAACACTAGGACCCGCTCTCCTCTGTTTCTTCGACGGTTTCGACGATTCCGACGAAACTAGTGTTCGAATTAAGGAAACCAAAGTCCCTGTCGCCACGAAATCTCCACCCCCTCGCTCCCCTTCTTCCCTTAGTTCGGACTCAGACGATGCAAACGTTCTTTTGCATTCCGAATCAGAAACCGAAGACGCGGAAAAAGAAGAGTTCCAATTGTTCACTCGCGCGCGTTATGATTACGCGCACTCGGCTCGTTACCCTCCGTTTTCTCCGCCGCGTGGCTATTCCGGCTCGAAGCCGCCGTCTCCGCCGCCTCCTTCCGGCTCCGCCTGGGATTTCCTTAACTTCTTCGAGCCGTACGAGAAGTACCACGTGCCGTATTTTCCTAGCGGCGGTGATGCTGACGGGGCAGAGAAGGACAAGGGGAAGGTTGAGAAACGTGACGAGTTTAAATCCAAGGGAGAAAATGAAGAAGTGAAGAAAAAGAAGGGTGATTCGAAGGAAAAGAAAGTGGTTTCGGAGAAAGAGGAAGTTGTTTCAGTTTCAGAGCAATGTAGTGACTCTGCGAGAGTGAAGTCAGGGAAAGGTTTCTCCGAGGCAATGAAAGAGATTCAGGTTCTGTTTGAGAAAGCATCGGAGTCGGGGAACCCCGTTTTGGAAATGCTGGACGTTGGGAAACTCCGTTACCATCGAAAATTTGACCTCAATCCGGTTTCGTGCAAGATGATGCATGTGTTTACTCCCTCAAGTCCTATTGGGGTTAAATGCATAGAATCCTCGTTGCTTGGGCGGAGAATGGGTTCTGGGTATGAAGGAGACAAGGGTCATAGTTACGGTAATCTCTGCTCTACTCTGAAAAAACTATGTATGTGGGAGAAGAAGCTGTATCATGAAGTCAAGGCCGAGGAGAAATTGCGCATGCTTCATCAGAAAAAGTGTAAGCAGTTGAGACGTATGAAACAAAAGGATGCCAATGCACAGAAAATTGATTCTGTTCAAACTTTTGTTGGGATTTTATCTACAAAAATGAAAATTTCTATACAAGTAGTTGACAAGATATCCATTACAATTAGTAAGTTGAGGGAAGAGGAGCTGTGGCCGCAGATCAACAGATTTTTTCTCAAGTTTCTCGGAATGTGGAAAGACATGCAAGAATGTTACAAATGCCAATACCAGCAAATTGTTGAAGCCAAAACTTTAGATGCCTCATCGTTAAACACAAAGCCTGGCAATGCTCATATTGATGCAACAATAAAACTCAAATCTGAGGTACAGAAATGGAATTTGAGCTTCTTAGATTGGATTCACGCCCAGAAGTCTCATGTGAAAGCCTTGAATGGTTGGCTAGTAAGATGTCTATTATACGAACCCGAAGAAGTACCCGATGATTCAACTCCCTTCTCACCTAGCAAGATTGGGGCACCACCTGTGTTTGTGATCTGTCACAAATGGTCGCAGGCAGTGGATAATCTCTCAGAGAAGAATATAATCGAAGCCGTAAATGGGTTCATGCTAAGAGTGAATGAGCTCTGGGAAAAGTATATTTTAGACCTTCAACAAAAACTAACATTGGACAAAGAATTTGAGAGAAAGGTAAAAATGTTGGAGAGGGAAGAGCAAAAGATGCACAAAGTGATGCGGGCTCATGAGAAAAAGATGGTTACAGTTGGCAGAGAAGAATCTGATGCACTGTTACGTGGAGATGCTGTGCACCATGCTGATGTCGTTGACACTACTAACCTACAATCAGGTTTGAAGCAGATCTTTGGTGCCATGGAGAAGTTCACTGACTCCACTGTTCGCTTATATGAAGAACTTTGCCAACAAATTAAGCAAGAGGAGAAACCAACAAAAATTAACTAG
>Glyma06g02181.1 sequence type=predicted peptide gene model=Glyma06g02181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCNTSRLDRLPAVALCRDRCKFVDEALRQSYALADAHVAHMEALKTLGPALLCFFDGFDDSDETSVRIKETKVPVATKSPPPRSPSSLSSDSDDANVLLHSESETEDAEKEEFQLFTRARYDYAHSARYPPFSPPRGYSGSKPPSPPPPSGSAWDFLNFFEPYEKYHVPYFPSGGDADGAEKDKGKVEKRDEFKSKGENEEVKKKKGDSKEKKVVSEKEEVVSVSEQCSDSARVKSGKGFSEAMKEIQVLFEKASESGNPVLEMLDVGKLRYHRKFDLNPVSCKMMHVFTPSSPIGVKCIESSLLGRRMGSGYEGDKGHSYGNLCSTLKKLCMWEKKLYHEVKAEEKLRMLHQKKCKQLRRMKQKDANAQKIDSVQTFVGILSTKMKISIQVVDKISITISKLREEELWPQINRFFLKFLGMWKDMQECYKCQYQQIVEAKTLDASSLNTKPGNAHIDATIKLKSEVQKWNLSFLDWIHAQKSHVKALNGWLVRCLLYEPEEVPDDSTPFSPSKIGAPPVFVICHKWSQAVDNLSEKNIIEAVNGFMLRVNELWEKYILDLQQKLTLDKEFERKVKMLEREEQKMHKVMRAHEKKMVTVGREESDALLRGDAVHHADVVDTTNLQSGLKQIFGAMEKFTDSTVRLYEELCQQIKQEEKPTKIN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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