Report for Sequence Feature Glyma06g02170
Feature Type: gene_model
Chromosome: Gm06
Start: 1433698
stop: 1435146
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g02170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G76240 AT
Annotation by Michelle Graham. TAIR10: Arabidopsis protein of unknown function (DUF241) | chr1:28602949-28603875 REVERSE LENGTH=308
SoyBase E_val: 7.00E-87 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03087 PFAM
Arabidopsis protein of unknown function
JGI ISS
UniRef100_I1K7E7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7E7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SGR0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T23E18.17 n=2 Tax=Arabidopsis thaliana RepID=Q9SGR0_ARATH
SoyBase E_val: 8.00E-83 ISS
Expression Patterns of Glyma06g02170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g02170
Paralog Evidence Comments
Glyma04g02070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g02170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g019100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g02170
Coding sequences of Glyma06g02170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g02170.1 sequence type=CDS gene model=Glyma06g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTAGGAGTTTTCCGGCGCTCCCTTTCATTCCCAAACAAAAATCCGAACCGTCCATCAGCTCCGAAACCGCACATATCTCACCACATCAGGTCCATCAGTCTTCCGTGCAGATCTCACCCTCTGATCTCAGAGATCAAGGACGAGATCAACGGCCTCAGAGCCTGGGCCTCCACCTCAAAATCCAATCCACAAACACACACAACAATTTCCCACGGTTTAACCCTTCTCAAAGACACACACGAAACCCTTCAACACATTCTCCAACTCCCCCAGACTCTAGAAACCCTCAGAAGCCACCCTCTCTGGGTCGAGAAGCTTCTAGAAGACTTCCTCCGTTTCGTCGACGCCTTCGGAATGTTCCAAACAGCCATTATGTCTCTCAAGGAAGAACACTCCTCCGCTCAGATGGTCATAAGAAAACGCGACGAGTCCAAGGTTGTCGCCTACGTAAAAGCTAAGAAGAAAATTTCCAAGGAAATGGAAAAGCTCGTGTCTGTCCTCCGATGTGTTCACGTCACACAACATCAGCAACATTCCATGCTGCAGGTTCCATCTTTCATTGTGGATGCTGAACTGAGACACGTCATCGCGGATGTCATGAGCGTCACGGTGTCCGTTTCCGTTGCGCTGTTCAACGGGATTGGGGTGTCGTTTTCGTCACGAAGGATAACGTGGACGCAGATGGTGAAGTTGTCCAGAAATTACGGTGGGAGGGTGAATAATAATAAGGAGCATGAAGGCATTGAAGAGCTTCGAAATGGGGTGGAATTAGTGGAAAGGCTTCATCAGAATCTGAAGAAGAAGGGTGATGAAGAAGTCAGGTTGGTTTTGAAGAAGATGCGGGATTTGGAGGAATGTGTTTGTGGCATTGAAAGTGTTACCGAGAAAGTTTTCAGGGCTTTGATAAACTCTCGGGTGGCGCTGCTCAATATTCTTACCCTTACACGGTAG
Predicted protein sequences of Glyma06g02170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g02170.1 sequence type=predicted peptide gene model=Glyma06g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVGVFRRSLSFPNKNPNRPSAPKPHISHHIRSISLPCRSHPLISEIKDEINGLRAWASTSKSNPQTHTTISHGLTLLKDTHETLQHILQLPQTLETLRSHPLWVEKLLEDFLRFVDAFGMFQTAIMSLKEEHSSAQMVIRKRDESKVVAYVKAKKKISKEMEKLVSVLRCVHVTQHQQHSMLQVPSFIVDAELRHVIADVMSVTVSVSVALFNGIGVSFSSRRITWTQMVKLSRNYGGRVNNNKEHEGIEELRNGVELVERLHQNLKKKGDEEVRLVLKKMRDLEECVCGIESVTEKVFRALINSRVALLNILTLTR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
