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Report for Sequence Feature Glyma06g02100

Feature Type:gene_model
Chromosome:Gm06
Start:1378845
stop:1382787
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63610AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). | chr1:23583675-23585599 REVERSE LENGTH=340 SoyBaseE_val: 4.00E-147ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7E0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7E0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SH45UniRef Annotation by Michelle Graham. Most informative UniRef hit: F2K11.3 n=1 Tax=Arabidopsis thaliana RepID=Q9SH45_ARATH SoyBaseE_val: 4.00E-53ISS

Expression Patterns of Glyma06g02100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02100
ParalogEvidenceComments
Glyma04g02000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g018500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02100
>Glyma06g02100.1   sequence type=CDS   gene model=Glyma06g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCGTTGACAGTGAAACCCTTCTTCACACCTAATTTAGTTTCTTCTTCTTCAACTTCCACTTCGTCCTCTTCGATTTCTCTCGTGTCCTTTCCATCTCGTTCGGTCTCATCAATTAGCTTTTCCAGAAATTTAAAGCCCAAAGGAAGATTTGGTCTCAGAGTTGAAGCATACGATTCCTCCAATAATGACAATTCCAACCCCGCCAGTGCTGGCGACTCCAAACCCCCTAATGGCACTTTGTCAAAGAGCAGGAGAGAAATTTTACTGGAATATGTTAAGAATGTGCAGCCAGAATTTATGGAATTGTTTGTGAAAAGAGCACCGCAACAGGTTGTGGATGCAATGCGACAAACAGTGACAAATATGATTGGAACACTGCCCCCTCAATTTTTTGCTGTAACAATTACCACTGTAGCTGAAAACCTTGCACAGCTCATGTACAGCATCATGATGACTGGATACATGTTCAAGAATGCGCAATACCGTTTGGAATTGCAAGAAAGTTTGGAACAAGTTGTTGCTCTTCCGGATGTGCAAGATAAAAAGGATGTGCCAGACTTTGCATCTGGCACACAAAAGAATGTTTCAGGTGAAGTTATTCGGTGGAACAATGTTTCTGGGCCTGAGAAAATAGATGCTAAAAAGTACATTGAATTACTTGAAGCGGAGATTGAGGAGCTGAGTTGTCAAGTTGGGAGACAAACTAGCAATGCACAAAATGAACTGTTGGAATACCTAAAATCTCTCGAGCCTCGAAATTTGAAGGAGTTGACTAGTACTGCCGGCGAGGACGTAGTGTTTGCGATGAATGCATTTATAAAGCGCCTGCTGGCTGTTTCAGATCCTAGCCAAATGAAGACTAGCGTGACCGAGACTAGTGCAGCTGAACTTGCGAAGCTGCTTTATTGGTTGATGGTGGTTGGGTACAGCATTCGCAATATTGAAGTTCGTTATGACATGGAAAGAGTATTTGGCGCTCCTCCAAAGCTAGCTGAATTACCGCCAGGTGAAAATGTTTAA
Predicted protein sequences of Glyma06g02100
>Glyma06g02100.1   sequence type=predicted peptide   gene model=Glyma06g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSLTVKPFFTPNLVSSSSTSTSSSSISLVSFPSRSVSSISFSRNLKPKGRFGLRVEAYDSSNNDNSNPASAGDSKPPNGTLSKSRREILLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSIMMTGYMFKNAQYRLELQESLEQVVALPDVQDKKDVPDFASGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELSCQVGRQTSNAQNELLEYLKSLEPRNLKELTSTAGEDVVFAMNAFIKRLLAVSDPSQMKTSVTETSAAELAKLLYWLMVVGYSIRNIEVRYDMERVFGAPPKLAELPPGENV*






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