Glyma06g02070 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g02070

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1359639
stop:	1364905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42320	AT	Annotation by Michelle Graham. TAIR10: Zn-dependent exopeptidases superfamily protein \| chr5:16918651-16920845 REVERSE LENGTH=379	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallocarboxypeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2650	KOG	Zinc carboxypeptidase	JGI		ISS
PTHR11705	Panther	PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B	JGI		ISS
PTHR11705:SF3	Panther	gb def: Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5J14	JGI		ISS
PF00246	PFAM	Zinc carboxypeptidase	JGI		ISS
UniRef100_B9R8M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxypeptidase B2, putative n=1 Tax=Ricinus communis RepID=B9R8M1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_C6TMW8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMW8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02070

Paralog	Evidence	Comments
Glyma04g01971	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g018200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02070

Limit To All Plant Sequences

>Glyma06g02070.2   sequence type=transcript   gene model=Glyma06g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGTGTAAATGATTCGTTTTGCGGTACAAATGTATAAATGAATATGTATGTGAGTGTGAGATGACCTTCCAACTATGTTCGATCGAGACCGTGGAACGTGGAAAAAGCTGCATAAACTACTCCGTCAGTTAAAATAATTAATTCAATACTCCCTCCCTCTTCGTCATTGGTGGAACACTTTGATAAGTTAATCAATAATAACGATATCAATATTAACATCAAATCAAACATAACATTTCATTACCATAAAATATGAAATGAAATTTAATCTGTTCTGGATCTTGCCATGGCTCTTTCCATTTTTCAATTTCTTCTGTTCTCAATCAGCCTCTGCTTCCTCGCTTCTTCTTTTCAAGATCTTCTTCTTCTCTCCGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTACGATCTCTACCATTCCAGTGACAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAAAATTATGTCGTAGGTTAAACTGTATATCCAATTTTGAGGGAAAAAAATTGTAAGTTAAATTGCTGTCTGTATTACTAAGTAACGCGAGCCTTTTTTTCTGAGGCCATACAATCTAATTCTTTAAAAGTGCCCAATTCAAGGACTGGGGGCTGTGTTGTAAACGAATGTATAAAGGTGTTTGTTATACTGAACGTCAATCC

Coding sequences of Glyma06g02070

Limit To All Plant Sequences

>Glyma06g02070.1   sequence type=CDS   gene model=Glyma06g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAA

>Glyma06g02070.2   sequence type=CDS   gene model=Glyma06g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCCATTTTTCAATTTCTTCTGTTCTCAATCAGCCTCTGCTTCCTCGCTTCTTCTTTTCAAGATCTTCTTCTTCTCTCCGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTACGATCTCTACCATTCCAGTGACAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAA

Predicted protein sequences of Glyma06g02070

Limit To All Plant Sequences

>Glyma06g02070.1   sequence type=predicted peptide   gene model=Glyma06g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEIRALVHRHPDKLTTETIKAGNKGYGAEVTVVTYCKEKKGNDERSKLRILISFGQHGRELITTELALRILSILSEEKILPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPHLWVNVHSGMEALFMPYDHKNSTPDGLPMQRMRSLLEEVNQLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPIDLATYNRVLSDWSATFFTIFKLVPQKLGDSKASILKLDKLVSIDEYLDGYLMERRNRYGKKMEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

>Glyma06g02070.2   sequence type=predicted peptide   gene model=Glyma06g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSIFQFLLFSISLCFLASSFQDLLLLSVNAQSHNLTQPSVTPINYDLYHSSDNLMEEIRALVHRHPDKLTTETIKAGNKGYGAEVTVVTYCKEKKGNDERSKLRILISFGQHGRELITTELALRILSILSEEKILPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPHLWVNVHSGMEALFMPYDHKNSTPDGLPMQRMRSLLEEVNQLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPIDLATYNRVLSDWSATFFTIFKLVPQKLGDSKASILKLDKLVSIDEYLDGYLMERRNRYGKKMEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain