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Report for Sequence Feature Glyma06g02060

Feature Type:gene_model
Chromosome:Gm06
Start:1351907
stop:1353018
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42330AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16926672-16927370 FORWARD LENGTH=205 SoyBaseE_val: 2.00E-38ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7D6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7D6_SOYBN SoyBaseE_val: 7.00E-144ISS

Expression Patterns of Glyma06g02060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02060
ParalogEvidenceComments
Glyma04g01960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g018100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02060
>Glyma06g02060.2   sequence type=CDS   gene model=Glyma06g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGTTGTAAACACAAAACGCTCCTATGCGTGTTTCAATTCAAACCCATTCCCTTCTTCAATAAAAAATAATAAAAGGGAGACAGCAACAGCCACAACAAGACACTCACTACTATTCCCACAACACAACATTAGCGTACTCTGTTTTACTCTCTATCTCTCTCTCTCTCTGTCTCAGCCAACAACACAACAATCAATGTACGCTGCATCAACCATGAAATCCATGTACAAGCCTCCATTGCCCAGATCTCCAATTCGCCTTCGACCCTCTCATGCTGTTCATTCATCAAACTCTATCGCTCTTCAAACCCCACCAGGTTCCTTGACCAAATCTCAGAAACCTGTTATCTCTCCAAACATGCGACCCGAATACCGCACCATTTCGTGCGAATTACGGGCTCTGACCAAGATGGTTCGTGATGAATTCAGCAAAGCCAATTCAGAGAAAGCGGCGAGCGCAAATTCGAGTGTTCTGTTCGAGAGAGGGAGATTCTACGATGAGTATTCCGCTAGAAGGAACGAGAGGCTCATGAGAAAGAAGGGAGTAACCGCTGTTGATGAAGGTAAGGCTAAACCTGTTCACTCTCTTGGGGTTACCATGGAATCTGGAAAGAAGAGTAGTAGTGTGAGAAAGATGGGAACTTTGAGGAAATCTATCTCTGCGGCTTATTCATCTGGAGTGAGTGAAACACCAAGGTACATGCTCAGAAGCATGACTAAGGAAAATAAGAAACCCCCTCTTGCTGCAAAATTTGACAAATCTGTTGTTGCTGGAGACAAGAAGATGGGAACAAGAGCAAGAAGGATCTAA
Predicted protein sequences of Glyma06g02060
>Glyma06g02060.2   sequence type=predicted peptide   gene model=Glyma06g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVVNTKRSYACFNSNPFPSSIKNNKRETATATTRHSLLFPQHNISVLCFTLYLSLSLSQPTTQQSMYAASTMKSMYKPPLPRSPIRLRPSHAVHSSNSIALQTPPGSLTKSQKPVISPNMRPEYRTISCELRALTKMVRDEFSKANSEKAASANSSVLFERGRFYDEYSARRNERLMRKKGVTAVDEGKAKPVHSLGVTMESGKKSSSVRKMGTLRKSISAAYSSGVSETPRYMLRSMTKENKKPPLAAKFDKSVVAGDKKMGTRARRI*






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