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Report for Sequence Feature Glyma06g02051

Feature Type:gene_model
Chromosome:Gm06
Start:1343947
stop:1350110
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36390AT Annotation by Michelle Graham. TAIR10: starch branching enzyme 2.1 | chr2:15264283-15269940 FORWARD LENGTH=858 SoyBaseE_val: 3.00E-141ISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0010021GO-bp Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003844GO-mf Annotation by Michelle Graham. GO Molecular Function: 1,4-alpha-glucan branching enzyme activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
KOG0470 KOG 1,4-alpha-glucan branching enzyme/starch branching enzyme II JGI ISS
PTHR10357Panther AMYLASE JGI ISS
PTHR10357:SF27Panther LYSOSOMAL ALPHA-GLUCOSIDASE JGI ISS
PF00128PFAM Alpha amylase, catalytic domain JGI ISS
PF02922PFAM Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JGI ISS
UniRef100_O04864UniRef Annotation by Michelle Graham. Best UniRef hit: 1,4-alpha-glucan branching enzyme (Fragment) n=1 Tax=Solanum tuberosum RepID=O04864_SOLTU SoyBaseE_val: 0ISS
UniRef100_O04864UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1,4-alpha-glucan branching enzyme (Fragment) n=1 Tax=Solanum tuberosum RepID=O04864_SOLTU SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g02051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g02051 not represented in the dataset
Glyma06g02051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02051
ParalogEvidenceComments
Glyma04g01950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g018000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02051
>Glyma06g02051.1   sequence type=CDS   gene model=Glyma06g02051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTATGTGGTGACATCTCATTTCAAGGGCAGAGCTGTTATGACAGATGACAAATCAACAATGTCATCCACTGAGGAAGACTTAGAAAACATTGGCATCTTTCGTATTTGTCCATCCCTAAAGCCATATAAAGATCACTTCAAATATAGAATGAAGAGATATGTAGATCAGAAAAAGCTTATTGAAGAATATGAAGGAGGTCTTGAGGAATTTGCTCAAGCTACTTTTCCCGTCTATCGTAACAGTGTCTATGGTAGATGGGAAGCACAAATTATTGGAGACTTTAATGGATGGGATGGTTCCAACCACCAGATAAAAAATCAGTTTGGTGTTTGGAGTATTAAGATCCCTGATACTGACGGAAATTCAGCTATACCACACAATTCAAGAGTGAAGTTTAGATTTAGACACGGGGATGGAGTTTGGGTTGATCGCATCTCTGCTTGGATCAAATATGCCACTCCATACGATGGTGTCTACTGGGATCCACCCCTTTCAGAGAGGTATCAATTTAAATATCCTCGTCCACCAAAGCCAAAGACCCCACGGATATATGAGGCTCATGTGGGGATGAGTAGCTCTGAACCCCGCATAAACTCTTACAGGGAATTTGCAGATGAGATTTTGCCCCATATTTGGGCAAATAACTATAATACAGTCCAGCTGATGGCCGTGATGGAGCATTCCTATTATGCATCATTTGGATATCATGTAACAAATTTTTTTGCTGTGAGCAGTAGATCAACCCCTGAAGATCTAAAGTATCCGATAGATAAGGCCCATAGCCTAGGTTTGCAGGTTTTGATGGATGTTATCCATAGTCTTGCTAGTAATAATGTTACTGATGGACTCAATGGCTTTGATGTTGGCCAAACTTCGCAAGATTCTTACTTCCATACTGGAGATAGAGGCTATCATAAATTGTGGGATAGTAGACTCTTTAACTATGCTAACTGGGAAGTTCTTCGTTTCCTTTTATCGAATTTAAGTATTTTGCCAGATGCAACTGTCATTGCTGAAGATGTTTCTGGCATGCCTGGACTTGGTCAACCAGTTTCTGATGGTGGAATTGGTTTTGACTATCGTCTAGCCATGGCAATCCCTGATAAATGGATTGATTACTTGAAGAACAAGAACGACTATGCATGGTCAATGAAGGAAATCTCTTGGAGTTTGACAAATAGGAGATACACTGAGAAATGTGTTTCCTATGCTGAAAGCCATGACCAGATGATACACTTCATAACAATGGCATTAGGTGGAGAGGGCTACCTTAATTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGATTGATTTCCCAAGAGAAGGCAATGGATGGAGTAATGAGAAGTGCAGGCTGTGTTGCTTGTCTGAGATATATGTTATAATTTTGTTTTTGGAACTTGTGCAGTTCATGAATGCATTTGACAGAGCAATGAACTTGCTTGATGATAACTTCTCATTCCTTGCATCAACAAAACAGATTGTGAGCAGTGCAGATGACGATGACAAGGTTATATAG
Predicted protein sequences of Glyma06g02051
>Glyma06g02051.1   sequence type=predicted peptide   gene model=Glyma06g02051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYVVTSHFKGRAVMTDDKSTMSSTEEDLENIGIFRICPSLKPYKDHFKYRMKRYVDQKKLIEEYEGGLEEFAQATFPVYRNSVYGRWEAQIIGDFNGWDGSNHQIKNQFGVWSIKIPDTDGNSAIPHNSRVKFRFRHGDGVWVDRISAWIKYATPYDGVYWDPPLSERYQFKYPRPPKPKTPRIYEAHVGMSSSEPRINSYREFADEILPHIWANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSTPEDLKYPIDKAHSLGLQVLMDVIHSLASNNVTDGLNGFDVGQTSQDSYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLSILPDATVIAEDVSGMPGLGQPVSDGGIGFDYRLAMAIPDKWIDYLKNKNDYAWSMKEISWSLTNRRYTEKCVSYAESHDQMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSNEKCRLCCLSEIYVIILFLELVQFMNAFDRAMNLLDDNFSFLASTKQIVSSADDDDKVI*






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