Glyma06g02020 - SoyBase

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Report for Sequence Feature Glyma06g02020

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1300563
stop:	1316328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38350	AT	Annotation by Michelle Graham. TAIR10: Patched family protein \| chr4:17958324-17966846 REVERSE LENGTH=1273	SoyBase	E_val: 0	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008158	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hedgehog receptor activity	SoyBase	N/A	ISS
KOG1933	KOG	Cholesterol transport protein (Niemann-Pick C disease protein)	JGI		ISS
PTHR10796	Panther	PATCHED-RELATED	JGI		ISS
PTHR10796:SF35	Panther	NIEMANN-PICK C1	JGI		ISS
PF02460	PFAM	Patched family	JGI		ISS
PF12349	PFAM	Sterol-sensing domain of SREBP cleavage-activation	JGI		ISS
UniRef100_B9H5I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9H5I2_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7C8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7C8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02020

Paralog	Evidence	Comments
Glyma04g01901	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g017700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02020

Limit To All Plant Sequences

>Glyma06g02020.1   sequence type=CDS   gene model=Glyma06g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTTCGCCTAGGGTTTTTCTGTTCACTATCTTTCTTACAGGTTTTTCTAATTTTATCTTTGGTAGAAGCAGACGATTTGTCCACAAGGCTTCTATTGACTTCCAATACAAACACAACGGGGGAAAGGCATTCCGAGGATTATTGTGCAATGTATGACATTTGTGGAACGCGCAGTGATGGTAAAGTAGTGAACTGCCCACATGGTTCCCCGGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACGTTTGTTGTACAGAAGCTCAGTTTGAAACATTAAGGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTGTTCTGTGAGCTTACATGTTCTCCGAACCAGAGTTTATTTATCAATGTGACTTCAGTTGACAATGTTAGCGGTAATTCGACAGTGGGCGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGGTTATATGAATCCTGCAAGGAGGTAAAGTTTGGCACTATGAATTCTAGAGCTCTACAATTTATTGGTGCTGGTGCTCAAAATTTTAAAGACTGGTTTGCTTTTATTGGTAGAAAAGCTGCCCCTCATGGTCTTGGTTCACCTTATGCAATTACATTCCGGCCAAATGCAACCGAGTCATCTGACATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGCGGTGACTGTCCTTCGTCTTCAGTATGCTCTAGTTCAGCTTCAACTACCACCAATAAGAAGGATTCCTGCTCTGTGAAAATTGGGACTTTAATGGTGAAGTGTGTTGACTTGATTTTAGCAGTCTTATACGTTATACTGATTTGCGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCGACATACAGAACAAAATCAATGTCTAATGTCATTAGTGATGGTGCGCTGTATTCTCATAGTAGGGAGAAGGATGAGAACGTCCCTATGCAGATTCATATGATGGAAGATGCTCAACAAAACAGAAATAGAGTCCGGCTCTCGGCTGTACAAGGATATATGACAAATTTTTACAGGAAATATGGATCATATGTAGCTAGACATCCAATTATGGTGTTGGCTTCATCTCTGGCTATAGTTCTTCTCCTCTGTCTAGGTCTAATCCAATTCAAGGTTGAGACACGACCCGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAACAGTTTTTTGATACTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATTCTGGCCACTGTCCCAGATAATGTGAATAGTACATCACCAAGAATTGTGACAGAGGACAACATTAGGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGACGGTATCTCTCCAAGATATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTTCAGTACTTCAAAATGGATCCCAAAAATTTTGATGATTATGGGGGAGTAGAGCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACCGATGTATGAGTGCATTTAAAGCTCCTCTGGATCCAAGCACTGTATTAGGAGGTTTTTCTGGGAATGATTATTCTGAGGCTTCTGCATTCATTGTAACATATCCAGTAAATAATGCTATTAATAAAGAAGGTAATGGAACCAGAAAAGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTTACTGATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCTTACATATCTCTTACTTTAGGGGATACCCTCCATCCTTCGTCTTTCTATATTTCATCTAAGGTAATGCTTGGTCTTTCTGGAGTAATTCTTGTTATGCTATCTGTCCTTGGATCAGTTGGATTTTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAAAAGCTGGAGTTGCCTTTAGAAGGAAGAATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTGGCCAGTGTATCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTCCTCCTGCAAGTTACCGCTTTTGTAGCTCTGATAGTTCTTGACTCTTTACGGGCAGAGGATAAGAGAGTTGATTGTTTTCCATGTATAAAAGTGCATGCGGACCCTGATACAGGAACTGGACGAAGAAAACCTGGTTTGTTGGCTCGATACATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGAGTAAAAATAGTTGTCATAGCTATTTTTGTGGGATTTGCATTGGCTAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAGCAAGAAATTGTTCTTCCCCGAGATTCATATCTTCAGGGTTATTTCAATAATGTTTCAGAATATCTTAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCAACGCATACAAATCAGCTTTGCTCCATTAGCCATTGCAATTCAGACTCTCTTTTAAATGAGATTGTGAGAGCAGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCGTGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGTTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCCCCTGGGGAAAGCTCTTGTGTTTCAGTAGGAACATGTAAAGATTGCACAACGTGTTTTCGTCACTCTGATCTCCATAATGATCGTCCATCTACAACACAATTTAGGGAGAAGCTGCCATGGTTTCTTAGTTCTCTTCCATCTGCAGATTGTGCAAAAGGTGGTCATGGAGCTTACACCAGCAGTGTTGAACTGAAAGGCTATGACAACGGCATTATTCAAGCATCGTCATTCCGTACTTATCATACCCCACTCAACAAGCAGGTTGACTACGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTGAAGATTGAGATTTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGATCAACCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGATTTTCACAAGCAGTTTATGGAGCTCATCAATAATTTTGTTGGTGTTGGCAATGATTGTTGTTGATCTTATGGGTTTGATGGCCATTCTGAATATCCAGTTGAATGCGCTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAAGCTTTGGGTACAATGGGTGCTTCGGTGTTCAGTGGTATCACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAAAACAGAAGTGTTTGTGATTTATTACTTTCGGATGTACTTGTCATTGGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTGCTATTAAGCGTCTTTGGTCCACCTTCAAGATGTTCAATCATTGAGCAAGGGGAAGATCGTTCATCAACCTCGTCATAG

Predicted protein sequences of Glyma06g02020

Limit To All Plant Sequences

>Glyma06g02020.1   sequence type=predicted peptide   gene model=Glyma06g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLRLGFFCSLSFLQVFLILSLVEADDLSTRLLLTSNTNTTGERHSEDYCAMYDICGTRSDGKVVNCPHGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDNVSGNSTVGGIDYFVTDAFGEGLYESCKEVKFGTMNSRALQFIGAGAQNFKDWFAFIGRKAAPHGLGSPYAITFRPNATESSDMKPMNVSTYSCGDISLGCSCGDCPSSSVCSSSASTTTNKKDSCSVKIGTLMVKCVDLILAVLYVILICVFLGWGLYHRIRERKPTYRTKSMSNVISDGALYSHSREKDENVPMQIHMMEDAQQNRNRVRLSAVQGYMTNFYRKYGSYVARHPIMVLASSLAIVLLLCLGLIQFKVETRPEKLWVGPGSKAAQEKQFFDTHLAPFYRIEQLILATVPDNVNSTSPRIVTEDNIRFLFEIQKKVDAIRANYSGLTVSLQDICMKPLDKDCATQSVLQYFKMDPKNFDDYGGVEHLNYCFEHYSSADRCMSAFKAPLDPSTVLGGFSGNDYSEASAFIVTYPVNNAINKEGNGTRKAVAWEKTFIQLVKDELLLMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSSFYISSKVMLGLSGVILVMLSVLGSVGFFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQKLELPLEGRISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHADPDTGTGRRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVGFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPVYFVVKNYNYSSESTHTNQLCSISHCNSDSLLNEIVRAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGESSCVSVGTCKDCTTCFRHSDLHNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYDNGIIQASSFRTYHTPLNKQVDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALINLAIAIGAVFIVCLIFTSSLWSSSIILLVLAMIVVDLMGLMAILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALGTMGASVFSGITLTKLVGVIVLCFSKTEVFVIYYFRMYLSLVLLGFLHGLVFLPVLLSVFGPPSRCSIIEQGEDRSSTSS*

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