Glyma06g01980 - SoyBase

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Report for Sequence Feature Glyma06g01980

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1259631
stop:	1264293
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20670	AT	Annotation by Michelle Graham. TAIR10: DNA-binding bromodomain-containing protein \| chr1:7164537-7167933 REVERSE LENGTH=652	SoyBase	E_val: 4.00E-137	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR22881	Panther	BROMODOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22881:SF3	Panther	BROMODOMAIN CONTAINING 7	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_B9R8P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9R8P3_RICCO	SoyBase	E_val: 2.00E-162	ISS
UniRef100_UPI000233976F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233976F related cluster n=1 Tax=unknown RepID=UPI000233976F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01980

Paralog	Evidence	Comments
Glyma04g01850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g017300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01980

Limit To All Plant Sequences

>Glyma06g01980.2   sequence type=transcript   gene model=Glyma06g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATGGGGTGGGTGATTTTTGCTTGCAGGATTGGAAGGTTCCGAAAGCGACTGACAGTAAACATGGTTCGCAGGGAGAGTCCGGTCCCACTACGCCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGGCTTCAAAAGTGTGTCTCTTGTAGTAGTGTTATTTGTTTCTTTCCTCTTTCTTTTTTTTTTTTTTTAAGTTGGGTATTTGATGTTCTGTACTGCTCACAACCTTCTCGCAGAAAGGACACACATGGGGTGTTCTCTGAGCCTGTGGATCCAGAAGAGCTTCCTGATTATCATGACATCATTAAACACCCGATGGATTTTGGAACTGTGAGGAAGAAATTGGATGATGGGCTATATACCGACTTGGAACATTTTGAGATAGATGTGTTCTTGATATGCTCTAATGCAATGCAATATAATTCCTCAGATACCATTTACCATCGACAGGCCCGAGCCATGCAAGAGATTGCAAGGAAGGACTTTGAGAATCTGAGACAAGATAGTGATGATGATAGTGAACCACAGCCCAAAATTGTGCAGAAAGGAAGGCCACCAGGCAAGCACTCAAGAAAGTCACTGGGACTTGGTATGCCTCCTTCTGAGCGTGTTGGTCCTGAATCTTCTTCTGATGCAACTCTGGCTTCTGGTGCGGATATTGGTAGTGGCTCCAACGGTTATAATCTAAGAAAAGTACCCAGCAAATTTCAGCCCACAGATTCATCTGCCAGGGCCTACAACAGCACTTTTAACAGTGGAGGGTATACTGGCTGTTCTGATTGGGAGAATGAATTTCCAGCTTCTGTTGTTAAAGCTGTGCTAAGATATGGAAAGAAGCAGTTTGCAGTTGATGAGACCAGGCGTGATACTTACAAAAATCCAGTGACTTTAGGAAATGAACGACCGATGTTGTCCACAGTTGAAGATGAATTCAAGCAACTTCTTGCTGTAGGAGTACACATGAAGCATAGCTATGCAAGAAGTCTAGCCCATTTTGCTGCAAACCTTGGTCCTGTTGTTTGGAAGATTGCTGCAAGTAAAATCAGAGGTGTGTTGCCAGCTGGACATGAATTTGGTCCTGGATGGGTAAGTGAAGACGACGGGTCATCACAGAGGCAACACTTCCCAGTTCGTGATGAGGGTAGAACTTCAGACCATCCTGTACCAGAGGATTATAGAAGTAGATTTTCTTCTCCATCTGGATCGTTTCCCCTTGCAAATAGATCAGGCTTGCAAAGTGGAGACATGGCTATAAATAATTACCAAAATGACTTGAATCCAGTAATCAACATACCTGGTGGGTCTGAATCCATAACTCCTATGAGGATTCAGCAGGAATCCATGGTGCACTCTGATGATTTTGGTTCACATGATCGGTTAGGTTCTAATTTTCCATCCCAAATGAAGATGGTAAGACTTGCTGATCTAACTGGGTCTTCGAGTGCTGGGGTTGCTCCTCAAATGTTTGACATGGATCCCCCCATAAGCAACCACATTGCACATACAAATGTTTGTCCTTCTCTTAAGGGTCAGTACTTAAGCAAATCAAGTCAATTAGATTCCGGTAATTTATTGGCACGGGAACCTGGATTTGAGCAACGAAGTTGGTCTCAAGGGCTTGCTGGAAAATCATCTTGGCAGGGATCGGAAGTTCCCACTAAACAAAATTCTTTTGCACTTGCTAATGACATAAATGGAGAGATTGGAACTACAAATTCATCTAATTCCAACGTAGAGGCTGGTTCTCAGTTGCAGCCCAATTTGGCATTACAGCTCTGATGATATATTAAATTTTTTGGATTGAATCCTATCATATTGCTTACTAACAATGATAATGTCATGTTATAGGAAAGAAAAGACACAATTTAATGGGCCTTTTTATATATATATATATTTCAGAAGCGTTTAGAAGTAGAACCTTTTCTGAATTTTTGTTTGTTGACTTCATAATAGAGGTTGGCCGTACCAGGAAGTATACAGTTGAATTGGTATCGGTCAAGTCTTTATGACAACGTGCGATTGAGACGTTGAATGTTCAATATTTCTCCCCATTTACTATATTGTTTTGGGAAACAATCCTGTTATCGCATCTTCAATGTATCATATAATAATTAATAATTATTTATATCTATATATCTATATATATT

Coding sequences of Glyma06g01980

Limit To All Plant Sequences

>Glyma06g01980.1   sequence type=CDS   gene model=Glyma06g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGAGGTATCTGAAAGTACCACGACGAAGAGGAAGAAGAAGGGACGCCCCTCTCTTTTGGATCTTCAAAAGCGATCTCTCAAAAAAGAACAGCAAAATCACCACCAGCAGCGACAAAGCAACAACTCCAATTCAGCCAATTCCCACAACAACAAGAACAAGACCAACAAAAACGCTGTTCCCCACGACGACGACGAGGACGAACGCAAGGAGAAGAAACACAAGCTCCTGGTCGGTCTCAATTCCCATCTCCAGAACCCAACATTATTTCCCAATTCCCAACCCTTCAATTCCGATCCCAACAAGAGGCGCAAGACTATTGACCCTCTCCAAACGGATTGGAAGGTTCCGAAAGCGACTGACAGTAAACATGGTTCGCAGGGAGAGTCCGGTCCCACTACGCCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGGCTTCAAAAAAAGGACACACATGGGGTGTTCTCTGAGCCTGTGGATCCAGAAGAGCTTCCTGATTATCATGACATCATTAAACACCCGATGGATTTTGGAACTGTGAGGAAGAAATTGGATGATGGGCTATATACCGACTTGGAACATTTTGAGATAGATGTGTTCTTGATATGCTCTAATGCAATGCAATATAATTCCTCAGATACCATTTACCATCGACAGGCCCGAGCCATGCAAGAGATTGCAAGGAAGGACTTTGAGAATCTGAGACAAGATAGTGATGATGATAGTGAACCACAGCCCAAAATTGTGCAGAAAGGAAGGCCACCAGGCAAGCACTCAAGAAAGTCACTGGGACTTGGTATGCCTCCTTCTGAGCGTGTTGGTCCTGAATCTTCTTCTGATGCAACTCTGGCTTCTGGTGCGGATATTGGTAGTGGCTCCAACGGTTATAATCTAAGAAAAGTACCCAGCAAATTTCAGCCCACAGATTCATCTGCCAGGGCCTACAACAGCACTTTTAACAGTGGAGGGTATACTGGCTGTTCTGATTGGGAGAATGAATTTCCAGCTTCTGTTGTTAAAGCTGTGCTAAGATATGGAAAGAAGCAGTTTGCAGTTGATGAGACCAGGCGTGATACTTACAAAAATCCAGTGACTTTAGGAAATGAACGACCGATGTTGTCCACAGTTGAAGATGAATTCAAGCAACTTCTTGCTGTAGGAGTACACATGAAGCATAGCTATGCAAGAAGTCTAGCCCATTTTGCTGCAAACCTTGGTCCTGTTGTTTGGAAGATTGCTGCAAGTAAAATCAGAGGTGTGTTGCCAGCTGGACATGAATTTGGTCCTGGATGGGTAAGTGAAGACGACGGGTCATCACAGAGGCAACACTTCCCAGTTCGTGATGAGGGTAGAACTTCAGACCATCCTGTACCAGAGGATTATAGAAGTAGATTTTCTTCTCCATCTGGATCGTTTCCCCTTGCAAATAGATCAGGCTTGCAAAGTGGAGACATGGCTATAAATAATTACCAAAATGACTTGAATCCAGTAATCAACATACCTGGTGGGTCTGAATCCATAACTCCTATGAGGATTCAGCAGGAATCCATGGTGCACTCTGATGATTTTGGTTCACATGATCGGTTAGGTTCTAATTTTCCATCCCAAATGAAGATGGTAAGACTTGCTGATCTAACTGGGTCTTCGAGTGCTGGGGTTGCTCCTCAAATGTTTGACATGGATCCCCCCATAAGCAACCACATTGCACATACAAATGTTTGTCCTTCTCTTAAGGGTCAGTACTTAAGCAAATCAAGTCAATTAGATTCCGGTAATTTATTGGCACGGGAACCTGGATTTGAGCAACGAAGTTGGTCTCAAGGGCTTGCTGGAAAATCATCTTGGCAGGGATCGGAAGTTCCCACTAAACAAAATTCTTTTGCACTTGCTAATGACATAAATGGAGAGATTGGAACTACAAATTCATCTAATTCCAACGTAGAGGCTGGTTCTCAGTTGCAGCCCAATTTGGCATTACAGCTCTGA

>Glyma06g01980.2   sequence type=CDS   gene model=Glyma06g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTGGAACTGTGAGGAAGAAATTGGATGATGGGCTATATACCGACTTGGAACATTTTGAGATAGATGTGTTCTTGATATGCTCTAATGCAATGCAATATAATTCCTCAGATACCATTTACCATCGACAGGCCCGAGCCATGCAAGAGATTGCAAGGAAGGACTTTGAGAATCTGAGACAAGATAGTGATGATGATAGTGAACCACAGCCCAAAATTGTGCAGAAAGGAAGGCCACCAGGCAAGCACTCAAGAAAGTCACTGGGACTTGGTATGCCTCCTTCTGAGCGTGTTGGTCCTGAATCTTCTTCTGATGCAACTCTGGCTTCTGGTGCGGATATTGGTAGTGGCTCCAACGGTTATAATCTAAGAAAAGTACCCAGCAAATTTCAGCCCACAGATTCATCTGCCAGGGCCTACAACAGCACTTTTAACAGTGGAGGGTATACTGGCTGTTCTGATTGGGAGAATGAATTTCCAGCTTCTGTTGTTAAAGCTGTGCTAAGATATGGAAAGAAGCAGTTTGCAGTTGATGAGACCAGGCGTGATACTTACAAAAATCCAGTGACTTTAGGAAATGAACGACCGATGTTGTCCACAGTTGAAGATGAATTCAAGCAACTTCTTGCTGTAGGAGTACACATGAAGCATAGCTATGCAAGAAGTCTAGCCCATTTTGCTGCAAACCTTGGTCCTGTTGTTTGGAAGATTGCTGCAAGTAAAATCAGAGGTGTGTTGCCAGCTGGACATGAATTTGGTCCTGGATGGGTAAGTGAAGACGACGGGTCATCACAGAGGCAACACTTCCCAGTTCGTGATGAGGGTAGAACTTCAGACCATCCTGTACCAGAGGATTATAGAAGTAGATTTTCTTCTCCATCTGGATCGTTTCCCCTTGCAAATAGATCAGGCTTGCAAAGTGGAGACATGGCTATAAATAATTACCAAAATGACTTGAATCCAGTAATCAACATACCTGGTGGGTCTGAATCCATAACTCCTATGAGGATTCAGCAGGAATCCATGGTGCACTCTGATGATTTTGGTTCACATGATCGGTTAGGTTCTAATTTTCCATCCCAAATGAAGATGGTAAGACTTGCTGATCTAACTGGGTCTTCGAGTGCTGGGGTTGCTCCTCAAATGTTTGACATGGATCCCCCCATAAGCAACCACATTGCACATACAAATGTTTGTCCTTCTCTTAAGGGTCAGTACTTAAGCAAATCAAGTCAATTAGATTCCGGTAATTTATTGGCACGGGAACCTGGATTTGAGCAACGAAGTTGGTCTCAAGGGCTTGCTGGAAAATCATCTTGGCAGGGATCGGAAGTTCCCACTAAACAAAATTCTTTTGCACTTGCTAATGACATAAATGGAGAGATTGGAACTACAAATTCATCTAATTCCAACGTAGAGGCTGGTTCTCAGTTGCAGCCCAATTTGGCATTACAGCTCTGA

Predicted protein sequences of Glyma06g01980

Limit To All Plant Sequences

>Glyma06g01980.1   sequence type=predicted peptide   gene model=Glyma06g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVSESTTTKRKKKGRPSLLDLQKRSLKKEQQNHHQQRQSNNSNSANSHNNKNKTNKNAVPHDDDEDERKEKKHKLLVGLNSHLQNPTLFPNSQPFNSDPNKRRKTIDPLQTDWKVPKATDSKHGSQGESGPTTPLPDKKLLLFILDRLQKKDTHGVFSEPVDPEELPDYHDIIKHPMDFGTVRKKLDDGLYTDLEHFEIDVFLICSNAMQYNSSDTIYHRQARAMQEIARKDFENLRQDSDDDSEPQPKIVQKGRPPGKHSRKSLGLGMPPSERVGPESSSDATLASGADIGSGSNGYNLRKVPSKFQPTDSSARAYNSTFNSGGYTGCSDWENEFPASVVKAVLRYGKKQFAVDETRRDTYKNPVTLGNERPMLSTVEDEFKQLLAVGVHMKHSYARSLAHFAANLGPVVWKIAASKIRGVLPAGHEFGPGWVSEDDGSSQRQHFPVRDEGRTSDHPVPEDYRSRFSSPSGSFPLANRSGLQSGDMAINNYQNDLNPVINIPGGSESITPMRIQQESMVHSDDFGSHDRLGSNFPSQMKMVRLADLTGSSSAGVAPQMFDMDPPISNHIAHTNVCPSLKGQYLSKSSQLDSGNLLAREPGFEQRSWSQGLAGKSSWQGSEVPTKQNSFALANDINGEIGTTNSSNSNVEAGSQLQPNLALQL*

>Glyma06g01980.2   sequence type=predicted peptide   gene model=Glyma06g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFGTVRKKLDDGLYTDLEHFEIDVFLICSNAMQYNSSDTIYHRQARAMQEIARKDFENLRQDSDDDSEPQPKIVQKGRPPGKHSRKSLGLGMPPSERVGPESSSDATLASGADIGSGSNGYNLRKVPSKFQPTDSSARAYNSTFNSGGYTGCSDWENEFPASVVKAVLRYGKKQFAVDETRRDTYKNPVTLGNERPMLSTVEDEFKQLLAVGVHMKHSYARSLAHFAANLGPVVWKIAASKIRGVLPAGHEFGPGWVSEDDGSSQRQHFPVRDEGRTSDHPVPEDYRSRFSSPSGSFPLANRSGLQSGDMAINNYQNDLNPVINIPGGSESITPMRIQQESMVHSDDFGSHDRLGSNFPSQMKMVRLADLTGSSSAGVAPQMFDMDPPISNHIAHTNVCPSLKGQYLSKSSQLDSGNLLAREPGFEQRSWSQGLAGKSSWQGSEVPTKQNSFALANDINGEIGTTNSSNSNVEAGSQLQPNLALQL*

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