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Report for Sequence Feature Glyma06g01970

Feature Type:gene_model
Chromosome:Gm06
Start:1249102
stop:1251254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g01970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20693AT Annotation by Michelle Graham. TAIR10: high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142 SoyBaseE_val: 1.00E-57ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0000785GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromatin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003682GO-mf Annotation by Michelle Graham. GO Molecular Function: chromatin binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0030527GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of chromatin SoyBaseN/AISS
KOG0381 KOG HMG box-containing protein JGI ISS
PTHR13711Panther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN JGI ISS
PTHR13711:SF70Panther SUBFAMILY NOT NAMED JGI ISS
PF00505PFAM HMG (high mobility group) box JGI ISS
UniRef100_I1K7C0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7C0_SOYBN SoyBaseE_val: 5.00E-107ISS
UniRef100_P26585UniRef Annotation by Michelle Graham. Most informative UniRef hit: HMG1/2-like protein n=1 Tax=Glycine max RepID=HMGL_SOYBN SoyBaseE_val: 2.00E-96ISS

Expression Patterns of Glyma06g01970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01970
ParalogEvidenceComments
Glyma04g01840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g017100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g01970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g01970
>Glyma06g01970.3   sequence type=transcript   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAACACACAGAAAACACAATATGATGGAAACGGAGGCATACGCTTAGGAATAACGCAGCCATCGCAAAATAAGCGCACGGATCAATGACATGGCAATAAATTTAAATTCCCGCCTAAACCCCTGACCTCCCCTTGATTTCATTTCGTTTGCAATTGAATTTCAATTTCCCTAGGGGCTTAATATCTCCCCTCACTTGTGCCTAGCCTTATGTCATAGTATTATCATTCATTCTCATCTTTCTCTCTTCTCTCTCCACCCAAACCCTAACTCCCGACCCTGTTCCCCTCTCGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAGTAAGTTTCACTCGCTTTTGATCCAACCATGAATTGTTTGTTTCTCTTACGATTCGACGCTTCTTACTGTGAAATAATCAAAAAAGCTAAGGTTCACGAATTTCCAGATCTGAGATCTGAGATCTCTGTTTGGTACGGCGATTATTTCAGATGTGTGCGTTTTACTATATTGTGGTTTTTTATTCTATTTATTTTGCTATGAATTTCAGACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAGAGAATGGACTGATAATTGCATTTATGTAGGTTCTGATGATTTTGATCATCTGTTGTAGGTGGTCTGGTCATTTCCTGATAAACATATTTCTTGCTTCCAAAAAATATTTCCCTGCTCCCTCCGTAAATTGGTTGTCTTTCCAAAACGTGAATAGTTTAAAGAAGGGAGTTCTTTATTTGTACTTCTAAATCCAACTGTTTAGTTAAGGGGTGTTTATCTCTTGTAGAGCTTTTAGTTTGATTTAGAGTTTTCTTGTTGAAATCTGGTTAAGTTTGTATCAATATAATTGGCTTATCATTCGCTTTCTGCTGTATATATGGTATTTATGTTTTGTTTAGCTCCTGATCTATGGTGTCACTTGATGACCCATGTTATACTGCTGATGCCATGTCTGTTG

>Glyma06g01970.4   sequence type=transcript   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAACACACAGAAAACACAATATGATGGAAACGGAGGCATACGCTTAGGAATAACGCAGCCATCGCAAAATAAGCGCACGGATCAATGACATGGCAATAAATTTAAATTCCCGCCTAAACCCCTGACCTCCCCTTGATTTCATTTCGTTTGCAATTGAATTTCAATTTCCCTAGGGGCTTAATATCTCCCCTCACTTGTGCCTAGCCTTATGTCATAGTATTATCATTCATTCTCATCTTTCTCTCTTCTCTCTCCACCCAAACCCTAACTCCCGACCCTGTTCCCCTCTCGGTACGTATTTCCGCTCAATTTTTCGTCGTTTTTCTGCAATTCTCTTCGTTTTCAAGCGATTTTCTTCGTTTTTCTACGAATTCACGCCGTAAAACTATCCTGATTGTGTGATTGCAGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAGAGAATGGACTGATAATTGCATTTATGTAGGTTCTGATGATTTTGATCATCTGTTGTAGGTGGTCTGGTCATTTCCTGATAAACATATTTCTTGCTTCCAAAAAATATTTCCCTGCTCCCTCCGTAAATTGGTTGTCTTTCCAAAACGTGAATAGTTTAAAGAAGGGAGTTCTTTATTTGTACTTCTAAATCCAACTGTTTAGTTAAGGGGTGTTTATCTCTTGTAGAGCTTTTAGTTTGATTTAGAGTTTTCTTGTTGAAATCTGGTTAAGTTTGTATCAATATAATTGGCTTATCATTCGCTTTCTGCTGTATATATGGTATTTATGTTTTGTTTAGCTCCTGATCTATGGTGTCACTTGATGACCCATGTTATACTGCTGATGCCATGTCTGTTG
Coding sequences of Glyma06g01970
>Glyma06g01970.1   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGTTTGTTTTCATAATTGTCTTGTATGGGTTTAA

>Glyma06g01970.3   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGCGTTTTACTATATTGTGGTTTTTTATTCTATTTATTTTGCTATGAATTTCAGACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAG

>Glyma06g01970.4   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAG
Predicted protein sequences of Glyma06g01970
>Glyma06g01970.1   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEVCFHNCLVWV*

>Glyma06g01970.3   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCAFYYIVVFYSIYFAMNFRLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*

>Glyma06g01970.4   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*






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