Glyma06g01970 - SoyBase

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Report for Sequence Feature Glyma06g01970

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1249102
stop:	1251254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20693	AT	Annotation by Michelle Graham. TAIR10: high mobility group B2 \| chr1:7177282-7178487 FORWARD LENGTH=142	SoyBase	E_val: 1.00E-57	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0000785	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromatin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0030527	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of chromatin	SoyBase	N/A	ISS
KOG0381	KOG	HMG box-containing protein	JGI		ISS
PTHR13711	Panther	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	JGI		ISS
PTHR13711:SF70	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00505	PFAM	HMG (high mobility group) box	JGI		ISS
UniRef100_I1K7C0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7C0_SOYBN	SoyBase	E_val: 5.00E-107	ISS
UniRef100_P26585	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HMG1/2-like protein n=1 Tax=Glycine max RepID=HMGL_SOYBN	SoyBase	E_val: 2.00E-96	ISS

Expression Patterns of Glyma06g01970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01970 not represented in the dataset	Glyma06g01970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01970

Paralog	Evidence	Comments
Glyma04g01840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g017100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01970

Limit To All Plant Sequences

>Glyma06g01970.3   sequence type=transcript   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAACACACAGAAAACACAATATGATGGAAACGGAGGCATACGCTTAGGAATAACGCAGCCATCGCAAAATAAGCGCACGGATCAATGACATGGCAATAAATTTAAATTCCCGCCTAAACCCCTGACCTCCCCTTGATTTCATTTCGTTTGCAATTGAATTTCAATTTCCCTAGGGGCTTAATATCTCCCCTCACTTGTGCCTAGCCTTATGTCATAGTATTATCATTCATTCTCATCTTTCTCTCTTCTCTCTCCACCCAAACCCTAACTCCCGACCCTGTTCCCCTCTCGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAGTAAGTTTCACTCGCTTTTGATCCAACCATGAATTGTTTGTTTCTCTTACGATTCGACGCTTCTTACTGTGAAATAATCAAAAAAGCTAAGGTTCACGAATTTCCAGATCTGAGATCTGAGATCTCTGTTTGGTACGGCGATTATTTCAGATGTGTGCGTTTTACTATATTGTGGTTTTTTATTCTATTTATTTTGCTATGAATTTCAGACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAGAGAATGGACTGATAATTGCATTTATGTAGGTTCTGATGATTTTGATCATCTGTTGTAGGTGGTCTGGTCATTTCCTGATAAACATATTTCTTGCTTCCAAAAAATATTTCCCTGCTCCCTCCGTAAATTGGTTGTCTTTCCAAAACGTGAATAGTTTAAAGAAGGGAGTTCTTTATTTGTACTTCTAAATCCAACTGTTTAGTTAAGGGGTGTTTATCTCTTGTAGAGCTTTTAGTTTGATTTAGAGTTTTCTTGTTGAAATCTGGTTAAGTTTGTATCAATATAATTGGCTTATCATTCGCTTTCTGCTGTATATATGGTATTTATGTTTTGTTTAGCTCCTGATCTATGGTGTCACTTGATGACCCATGTTATACTGCTGATGCCATGTCTGTTG

>Glyma06g01970.4   sequence type=transcript   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAACACACAGAAAACACAATATGATGGAAACGGAGGCATACGCTTAGGAATAACGCAGCCATCGCAAAATAAGCGCACGGATCAATGACATGGCAATAAATTTAAATTCCCGCCTAAACCCCTGACCTCCCCTTGATTTCATTTCGTTTGCAATTGAATTTCAATTTCCCTAGGGGCTTAATATCTCCCCTCACTTGTGCCTAGCCTTATGTCATAGTATTATCATTCATTCTCATCTTTCTCTCTTCTCTCTCCACCCAAACCCTAACTCCCGACCCTGTTCCCCTCTCGGTACGTATTTCCGCTCAATTTTTCGTCGTTTTTCTGCAATTCTCTTCGTTTTCAAGCGATTTTCTTCGTTTTTCTACGAATTCACGCCGTAAAACTATCCTGATTGTGTGATTGCAGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAGAGAATGGACTGATAATTGCATTTATGTAGGTTCTGATGATTTTGATCATCTGTTGTAGGTGGTCTGGTCATTTCCTGATAAACATATTTCTTGCTTCCAAAAAATATTTCCCTGCTCCCTCCGTAAATTGGTTGTCTTTCCAAAACGTGAATAGTTTAAAGAAGGGAGTTCTTTATTTGTACTTCTAAATCCAACTGTTTAGTTAAGGGGTGTTTATCTCTTGTAGAGCTTTTAGTTTGATTTAGAGTTTTCTTGTTGAAATCTGGTTAAGTTTGTATCAATATAATTGGCTTATCATTCGCTTTCTGCTGTATATATGGTATTTATGTTTTGTTTAGCTCCTGATCTATGGTGTCACTTGATGACCCATGTTATACTGCTGATGCCATGTCTGTTG

Coding sequences of Glyma06g01970

Limit To All Plant Sequences

>Glyma06g01970.1   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGTTTGTTTTCATAATTGTCTTGTATGGGTTTAA

>Glyma06g01970.3   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGCGTTTTACTATATTGTGGTTTTTTATTCTATTTATTTTGCTATGAATTTCAGACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAG

>Glyma06g01970.4   sequence type=CDS   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGGTATTCAACAAAGAACATCCTGAAAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGAAGGCAGTGGCGAGGAAGAGGATGACGATTAG

Predicted protein sequences of Glyma06g01970

Limit To All Plant Sequences

>Glyma06g01970.1   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEVCFHNCLVWV*

>Glyma06g01970.3   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCAFYYIVVFYSIYFAMNFRLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*

>Glyma06g01970.4   sequence type=predicted peptide   gene model=Glyma06g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*

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