Glyma06g01950 - SoyBase

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Report for Sequence Feature Glyma06g01950

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1236081
stop:	1242822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76680	AT	Annotation by Michelle Graham. TAIR10: 12-oxophytodienoate reductase 1 \| chr1:28776982-28778271 FORWARD LENGTH=372	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0031407	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxylipin metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016629	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 12-oxophytodienoate reductase activity	SoyBase	N/A	ISS
KOG0134	KOG	NADH:flavin oxidoreductase/12-oxophytodienoate reductase	JGI		ISS
PTHR22893	Panther	NADH OXIDOREDUCTASE-RELATED	JGI		ISS
PTHR22893:SF13	Panther	12-OXOPHYTODIENOATE REDUCTASE OPR	JGI		ISS
PF00724	PFAM	NADH:flavin oxidoreductase / NADH oxidase family	JGI		ISS
UniRef100_C5I848	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 12-oxophytodienoic acid 10,10-reductase n=1 Tax=Astragalus sinicus RepID=C5I848_ASTSI	SoyBase	E_val: 0	ISS
UniRef100_I1K7B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7B9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01950 not represented in the dataset	Glyma06g01950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g01950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g016900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01950

Limit To All Plant Sequences

>Glyma06g01950.3   sequence type=transcript   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAGTTTGTCTGAGGTTCCAAAATTGGAGCTGAATTAAACGAAATGCAAAGAAGATAGAAGAGTGTAGTAGCAAGCGAGGCAATCAGGTGGAGGAGGATGAACAAGACGATGGAAGAGAACGAGAAAGCGTTTAATGTTAATGGAAGGGAAGTGATACCTCTCCTCGCCCCATTCAAAATGGGAAAATTCAATCTATCTCACAGGATTGTTCTGGCACCGTTAACAAGAACGAGGTCATACAACTTCATGGCTCAGCCTCATGCTGCTTTGTATTATTCTCAAAGAACAACAAAGGGTGGATTTTTGATTGGGGAAGCCTCGGGGGTGTCAGACACTGCACAAGGGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAACTCTGGCACGCCGGAAGAGTCTCCAACTATGTATACCAGCCAAATGGGGAGCCCCCAATTTCAAGCACGAACAAGGCGGTTCAAGGTAGCAGCACCCAATACCCACCTCCACGTCGTCTAAGAACCGATGAAATCCCTGAGATTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGACGGGGTAGAGATACATGGAGCTAATGGATACTTGCTAGAACAATTTCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGCTTAGAAAATCGTTGTCGGTTTCCACTAATGGTTGTGAAGGCTGTATGTGATGACATTGGAGCTGACAAAGTTGGTGTTAGGCTATCCCCTTTCGCCAATTATTGTAATTGTGTAGACTCTAATCCTCAAGCGTTAGGCATTTACATGGCACAATCCTTGAGCCAATTGGGCATTCTTTATTGCCATGTCATTGAGCCCAGGATGCTCACAATGTTTGAAAAACATGAGACAGACGTGTCCCTTTTGCCTATTCGAAAGGCCTTCAACGGAACATTTATTGTTGCTGGTGGCTACAACAGGAGTGAGGGAAACAGAGTCATAGCCAATGGAGGTGCAGATTTGGTGGCTTATGGACGCCTGTTTTTGGCAAATCCAGACTTGCCCAAAAGATTTGAACTCGATGTTGAGTTAAACAAGGCTGATAGAAGCACTTTTTACACCACTGATCCTGTTGTTGGATATACAGATTATCCATTTCTTGAAAATGATTGTTAAAAGCACATATTAAATTTTATTTAGATAAATCTCTCTTGTAATAAAGGAGCATTTCATTACTATGATATAACAAGCTCCAAGCAATAATGTGCAAATGTCCTACACCAATCTTACTCAACCAGTTACGATGTTTCCTAACCCATACAAGATATTATTGTG

>Glyma06g01950.4   sequence type=transcript   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGCACTTTGTGCTTCAAAATCTAATGGCTTGTTCTATCAACACATGAATTGTTCTTTCATGTACCTGTCATTAATCAAATAATTGTCCTTTAAAGCAGAAAAATCATCAATCTAAATGTAGACCTCAATGGAAACAAAGCAAAGAGTATCATAGGGAAATAAAAACATAATATTACGCAACCACTCTCCTCTCCGCTTCTTCTCTCTCGTTCAGACGCCGCCACGCACCACCACTGCATGCCTCCATTTCCCTCACACGGCGCAGTATGATGGTGGAGGAGGATGAACAAGACGATGGAAGAGAACGAGAAAGCGTTTAATGTTAATGGAAGGGAAGTGATACCTCTCCTCGCCCCATTCAAAATGGGAAAATTCAATCTATCTCACAGGATTGTTCTGGCACCGTTAACAAGAACGAGGTCATACAACTTCATGGCTCAGCCTCATGCTGCTTTGTATTATTCTCAAAGAACAACAAAGGGTGGATTTTTGATTGGGGAAGCCTCGGGGGTGTCAGACACTGCACAAGGGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAACTCTGGCACGCCGGAAGAGTCTCCAACTATGTATACCAGCCAAATGGGGAGCCCCCAATTTCAAGCACGAACAAGGCGGTTCAAGGTAGCAGCACCCAATACCCACCTCCACGTCGTCTAAGAACCGATGAAATCCCTGAGATTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGACGGGGTAGAGATACATGGAGCTAATGGATACTTGCTAGAACAATTTCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGCTTAGAAAATCGTTGTCGGTTTCCACTAATGGTTGTGAAGGCTGTATGTGATGACATTGGAGCTGACAAAGTTGGTGTTAGGCTATCCCCTTTCGCCAATTATTGTAATTGTGTAGACTCTAATCCTCAAGCGTTAGGCATTTACATGGCACAATCCTTGAGCCAATTGGGCATTCTTTATTGCCATGTCATTGAGCCCAGGATGCTCACAATGTTTGAAAAACATGAGACAGACGTGTCCCTTTTGCCTATTCGAAAGGCCTTCAACGGAACATTTATTGTTGCTGGTGGCTACAACAGGAGTGAGGGAAACAGAGTCATAGCCAATGGAGGTGCAGATTTGGTGGCTTATGGACGCCTGTTTTTGGCAAATCCAGACTTGCCCAAAAGATTTGAACTCGATGTTGAGTTAAACAAGGCTGATAGAAGCACTTTTTACACCACTGATCCTGTTGTTGGATATACAGATTATCCATTTCTTGAAAATGATTGTTAAAAGCACATATTAAATTTTATTTAGATAAATCTCTCTTGTAATAAAGGAGCATTTCATTACTATGATATAACAAGCTCCAAGCAATAATGTGCAAATGTCCTACACCAATCTTACTCAACCAGTTACGATGTTTCCTAACCCATACAAGATATTATTGTG

Coding sequences of Glyma06g01950

Limit To All Plant Sequences

>Glyma06g01950.2   sequence type=CDS   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGACGATGGAAGAGAACGAGAAAGCGTTTAATGTTAATGGAAGGGAAGTGATACCTCTCCTCGCCCCATTCAAAATGGGAAAATTCAATCTATCTCACAGGATTGTTCTGGCACCGTTAACAAGAACGAGGTCATACAACTTCATGGCTCAGCCTCATGCTGCTTTGTATTATTCTCAAAGAACAACAAAGGGTGGATTTTTGATTGGGGAAGCCTCGGGGGTGTCAGACACTGCACAAGGGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAACTCTGGCACGCCGGAAGAGTCTCCAACTATGTATACCAGCCAAATGGGGAGCCCCCAATTTCAAGCACGAACAAGGCGGTTCAAGGTAGCAGCACCCAATACCCACCTCCACGTCGTCTAAGAACCGATGAAATCCCTGAGATTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGACGGGGTAGAGATACATGGAGCTAATGGATACTTGCTAGAACAATTTCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGCTTAGAAAATCGTTGTCGGTTTCCACTAATGGTTGTGAAGGCTGTATGTGATGACATTGGAGCTGACAAAGTTGGTGTTAGGCTATCCCCTTTCGCCAATTATTGTAATTGTGTAGACTCTAATCCTCAAGCGTTAGGCATTTACATGGCACAATCCTTGAGCCAATTGGGCATTCTTTATTGCCATGTCATTGAGCCCAGGATGCTCACAATGTTTGAAAAACATGAGACAGACGTGTCCCTTTTGCCTATTCGAAAGGCCTTCAACGGAACATTTATTGTTGCTGGTGGCTACAACAGGAGTGAGGGAAACAGAGTCATAGCCAATGGAGGTGCAGATTTGGTGGCTTATGGACGCCTGTTTTTGGCAAATCCAGACTTGCCCAAAAGATTTGAACTCGATGTTGAGTTAAACAAGGCTGATAGAAGCACTTTTTACACCACTGATCCTGTTGTTGGATATACAGATTATCCATTTCTTGAAAATGATTGTTAA

>Glyma06g01950.3   sequence type=CDS   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGACGATGGAAGAGAACGAGAAAGCGTTTAATGTTAATGGAAGGGAAGTGATACCTCTCCTCGCCCCATTCAAAATGGGAAAATTCAATCTATCTCACAGGATTGTTCTGGCACCGTTAACAAGAACGAGGTCATACAACTTCATGGCTCAGCCTCATGCTGCTTTGTATTATTCTCAAAGAACAACAAAGGGTGGATTTTTGATTGGGGAAGCCTCGGGGGTGTCAGACACTGCACAAGGGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAACTCTGGCACGCCGGAAGAGTCTCCAACTATGTATACCAGCCAAATGGGGAGCCCCCAATTTCAAGCACGAACAAGGCGGTTCAAGGTAGCAGCACCCAATACCCACCTCCACGTCGTCTAAGAACCGATGAAATCCCTGAGATTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGACGGGGTAGAGATACATGGAGCTAATGGATACTTGCTAGAACAATTTCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGCTTAGAAAATCGTTGTCGGTTTCCACTAATGGTTGTGAAGGCTGTATGTGATGACATTGGAGCTGACAAAGTTGGTGTTAGGCTATCCCCTTTCGCCAATTATTGTAATTGTGTAGACTCTAATCCTCAAGCGTTAGGCATTTACATGGCACAATCCTTGAGCCAATTGGGCATTCTTTATTGCCATGTCATTGAGCCCAGGATGCTCACAATGTTTGAAAAACATGAGACAGACGTGTCCCTTTTGCCTATTCGAAAGGCCTTCAACGGAACATTTATTGTTGCTGGTGGCTACAACAGGAGTGAGGGAAACAGAGTCATAGCCAATGGAGGTGCAGATTTGGTGGCTTATGGACGCCTGTTTTTGGCAAATCCAGACTTGCCCAAAAGATTTGAACTCGATGTTGAGTTAAACAAGGCTGATAGAAGCACTTTTTACACCACTGATCCTGTTGTTGGATATACAGATTATCCATTTCTTGAAAATGATTGTTAA

>Glyma06g01950.4   sequence type=CDS   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGACGATGGAAGAGAACGAGAAAGCGTTTAATGTTAATGGAAGGGAAGTGATACCTCTCCTCGCCCCATTCAAAATGGGAAAATTCAATCTATCTCACAGGATTGTTCTGGCACCGTTAACAAGAACGAGGTCATACAACTTCATGGCTCAGCCTCATGCTGCTTTGTATTATTCTCAAAGAACAACAAAGGGTGGATTTTTGATTGGGGAAGCCTCGGGGGTGTCAGACACTGCACAAGGGTACCCAAATACACCAGGAATTTGGACAAGAGAACAAGTGGAAGCATGGAAACCAATTGTGAGAGCCGTTCATGAAAATGGGGGCATATTCTTTTGCCAACTCTGGCACGCCGGAAGAGTCTCCAACTATGTATACCAGCCAAATGGGGAGCCCCCAATTTCAAGCACGAACAAGGCGGTTCAAGGTAGCAGCACCCAATACCCACCTCCACGTCGTCTAAGAACCGATGAAATCCCTGAGATTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGACGGGGTAGAGATACATGGAGCTAATGGATACTTGCTAGAACAATTTCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGCTTAGAAAATCGTTGTCGGTTTCCACTAATGGTTGTGAAGGCTGTATGTGATGACATTGGAGCTGACAAAGTTGGTGTTAGGCTATCCCCTTTCGCCAATTATTGTAATTGTGTAGACTCTAATCCTCAAGCGTTAGGCATTTACATGGCACAATCCTTGAGCCAATTGGGCATTCTTTATTGCCATGTCATTGAGCCCAGGATGCTCACAATGTTTGAAAAACATGAGACAGACGTGTCCCTTTTGCCTATTCGAAAGGCCTTCAACGGAACATTTATTGTTGCTGGTGGCTACAACAGGAGTGAGGGAAACAGAGTCATAGCCAATGGAGGTGCAGATTTGGTGGCTTATGGACGCCTGTTTTTGGCAAATCCAGACTTGCCCAAAAGATTTGAACTCGATGTTGAGTTAAACAAGGCTGATAGAAGCACTTTTTACACCACTGATCCTGTTGTTGGATATACAGATTATCCATTTCTTGAAAATGATTGTTAA

Predicted protein sequences of Glyma06g01950

Limit To All Plant Sequences

>Glyma06g01950.2   sequence type=predicted peptide   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKTMEENEKAFNVNGREVIPLLAPFKMGKFNLSHRIVLAPLTRTRSYNFMAQPHAALYYSQRTTKGGFLIGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVRAVHENGGIFFCQLWHAGRVSNYVYQPNGEPPISSTNKAVQGSSTQYPPPRRLRTDEIPEIVNDFRMAAKNAIEAGFDGVEIHGANGYLLEQFLKDKVNDRDDEYGGSLENRCRFPLMVVKAVCDDIGADKVGVRLSPFANYCNCVDSNPQALGIYMAQSLSQLGILYCHVIEPRMLTMFEKHETDVSLLPIRKAFNGTFIVAGGYNRSEGNRVIANGGADLVAYGRLFLANPDLPKRFELDVELNKADRSTFYTTDPVVGYTDYPFLENDC*

>Glyma06g01950.3   sequence type=predicted peptide   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKTMEENEKAFNVNGREVIPLLAPFKMGKFNLSHRIVLAPLTRTRSYNFMAQPHAALYYSQRTTKGGFLIGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVRAVHENGGIFFCQLWHAGRVSNYVYQPNGEPPISSTNKAVQGSSTQYPPPRRLRTDEIPEIVNDFRMAAKNAIEAGFDGVEIHGANGYLLEQFLKDKVNDRDDEYGGSLENRCRFPLMVVKAVCDDIGADKVGVRLSPFANYCNCVDSNPQALGIYMAQSLSQLGILYCHVIEPRMLTMFEKHETDVSLLPIRKAFNGTFIVAGGYNRSEGNRVIANGGADLVAYGRLFLANPDLPKRFELDVELNKADRSTFYTTDPVVGYTDYPFLENDC*

>Glyma06g01950.4   sequence type=predicted peptide   gene model=Glyma06g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKTMEENEKAFNVNGREVIPLLAPFKMGKFNLSHRIVLAPLTRTRSYNFMAQPHAALYYSQRTTKGGFLIGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVRAVHENGGIFFCQLWHAGRVSNYVYQPNGEPPISSTNKAVQGSSTQYPPPRRLRTDEIPEIVNDFRMAAKNAIEAGFDGVEIHGANGYLLEQFLKDKVNDRDDEYGGSLENRCRFPLMVVKAVCDDIGADKVGVRLSPFANYCNCVDSNPQALGIYMAQSLSQLGILYCHVIEPRMLTMFEKHETDVSLLPIRKAFNGTFIVAGGYNRSEGNRVIANGGADLVAYGRLFLANPDLPKRFELDVELNKADRSTFYTTDPVVGYTDYPFLENDC*

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