Report for Sequence Feature Glyma06g01940
Feature Type: gene_model
Chromosome: Gm06
Start: 1227180
stop: 1229265
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g01940
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G35550 AT
Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
SoyBase E_val: 4.00E-72 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PTHR24329 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24329:SF295 Panther
JGI ISS
PF00046 PFAM
Homeobox domain
JGI ISS
UniRef100_I1K7B8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7B8_SOYBN
SoyBase E_val: 5.00E-148 ISS
UniRef100_Q9ZRZ4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: HB2 homeodomain protein (Fragment) n=2 Tax=Populus RepID=Q9ZRZ4_9ROSI
SoyBase E_val: 1.00E-86 ISS
Expression Patterns of Glyma06g01940
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g01940
Paralog Evidence Comments
Glyma04g01830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g01940 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g016800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g01940
Coding sequences of Glyma06g01940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g01940.1 sequence type=CDS gene model=Glyma06g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCAGAGCATCATCACCAGACCTCAAACGCTGGTGGTATTATTGGAGGCCTTTACGTCAAAGTTATGACCGACGATCAAATGGAACTGCTCAGGCAACAGATTTCTGTCTATGCCACCATCTGTCAACAGCTCGTTGAGATGCACAAGGCCGTAACTACCCAACAGGACCTCGCAGGGCTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGCTCTGGACACAAGATAACTGCGAGGCAGCGCTGGACTCCAACACCTCTGCAGCTTCAAGTACTTGAGCGTATTTTTGACGAGGGAAATGGTACTCCGAGCAAGCAGAAGATCAAGGACATAACCATTGAACTTGGCCAACATGGCCAAATATCAGAGACAAATGTTTATAACTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTCACTCCCGCACTGAATGTTGTGGAACCAGAAGTGGAGACAGAAGTTGAAGTTGAGTCTCCAAAAGAGAAAAAGACTCGTGCAGAAGGCTTTCAGGTTCAGCCCTATGAGAATTCGTCACCTCATAGGATCAAGGATATGTACATCCAGAGTCCTGACATAGGATTTGACCAATTGATGAGTAAAATAGAAGTTGCAGGCTGCTACAGTTCTTATTTTCTTTGA
Predicted protein sequences of Glyma06g01940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g01940.1 sequence type=predicted peptide gene model=Glyma06g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAEHHHQTSNAGGIIGGLYVKVMTDDQMELLRQQISVYATICQQLVEMHKAVTTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQVLERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQLTPALNVVEPEVETEVEVESPKEKKTRAEGFQVQPYENSSPHRIKDMYIQSPDIGFDQLMSKIEVAGCYSSYFL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
