Glyma06g01930 - SoyBase

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Report for Sequence Feature Glyma06g01930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1213771
stop:	1224658
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20760	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF hand family protein \| chr1:7209515-7214773 FORWARD LENGTH=1019	SoyBase	E_val: 0	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0998	KOG	Synaptic vesicle protein EHS-1 and related EH domain proteins	JGI		ISS
PTHR11216	Panther	EH DOMAIN	JGI		ISS
PTHR11216:SF12	Panther	INTERSECTIN-RELATED	JGI		ISS
UniRef100_B9R8Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8Q3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K7B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7B7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01930

Paralog	Evidence	Comments
Glyma04g01820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g016700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01930

Limit To All Plant Sequences

>Glyma06g01930.1   sequence type=CDS   gene model=Glyma06g01930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAGTTCGAATCGTTTTTCAGGAGAGCAGATTTGGACGGAGATGGCAGAATCAGTGGAGCCGAAGCTGTCTCTTTCTTTCAGGGATCCAATTTGCCCAAACAAGTCCTCGCTCAGGTGTGGGCGTATGCTGATCAGGCCAAAACGGGATTCCTTGGCCGCGCAGAGTTTTTTAATGCTCTGAGGTTAGTCACTGTGGCTCAGAGTAAGCGAGATTTAACGCCTGATATTGTGAAGGCAGCGTTGTATGGTCCTGCTGCTGCTAAAATCCCTGCGCCACAGATTAATCTTGCTGCCGTGCCTCAACAACGTCCAAATTCGATGCCTGGTGCTGGGTCTGTCGGGCAGATGGGTGTTACCGCACCCAATTTGGCTCAAAGTTTTCCCTATAGAGGACAAGGGTTGGCAGGTCCTGGTGCAAACCCGCAATATTATCCTTCGCAGCAGAATCCTGGCATGAGACCTCCTCAATCCATGCCTGCTGGTGGCGGTCTGCATCCACAACAGGGTGTTGCAGGTCCAGATATTTCTAGAGGAGTTAACATGGGTGGTCACAGTTTCTCAAATCCTGGCGTCTCAAATGATTGGAATAATGTAAGGCCCGGTATGGTTGCTACCAGACCTGCAGGAATGATCCCGTCAGCTGCCTTACCGTCGTCCACATCTCCAGTTTCACCAATGCCCCAGTCATCTCCAATCTCACCAATGCCCCAGTCAACAACTGTTAACACTAAAGCATTAGGTGTTTCTGGAAATGGGTTCTCCTCCAATTCAGTTTTGGGCAATGATTTTTTCTCTGATGCCTCATCGACACAGAAACAAGAACCTGCTGGACAGAGTTATTCTGTCAGCAATGTCTCATCAGCCATTGTTCCTGTTTCCACTGCTTCCCAACCTGCAAGTAAACAAAATTCACTTGACTCATTGCAGGGTGCATATTCTTCAATGCTGCCTGCAAATAGTCAGTTTCAGCGGCCACAGTCTGCACCAATCACAACCCAGCAAATTTCACCACCAGCTTCTTCTTCACCACATACACCATCTGGGATGACAGCTGGGCTTGGAAATGCAAATTCTGACAATTCACAGCTTTCTTGGCCAAAAATGAAACCTACTGATGTGCAGAAGTATACAAAGGTGTTTATGGAAGTTGACACTGACAGGGATGGGAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGCTGGAGATTACCCATAGATGTCTTAAAGAAGGTGTGGGACTTGTCTGATCAGGACAATGATAGCATGCTTTCATTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAACGTTACAGGGAAGGTCGGCCTCTTCCACAGTCTCTTCCAAGCAATGTTATGTTTGACGAGACACTGATGTCAATGACAGGCCAACCAAAAAGTGCTTATGGAAATGCAGCCTGGGGTATTGGCCAAGGTTTTCGGCAGCAACAAGGTATTCCAGGTGCTCGGCCAGTGGCACCAACAGCTGGTTTGAGGCCATCAGTGCATGGAAGTTTTGCCCGGGCTGATGGCACTCAACAGCCCAATCAGCAAAAGTCAGGAACACCTGTGTTGGAGGATTCCTTTTTGAATGGTGAGCAGAATATATTGAATTCAAAGCCTCAAGAGGCAGCAACTGCAGAGAAAAAGTTTGAAGAAACTCAGAATGTGATTTTGGATTCAAAAGAGAAGATTGAGTTATACCGCAACAAAATGCAGGAACTGGTTCTATATAGAAGCAGATGTGATAATCGACTAAATGAGATTACAGAAAGGGCGTCTGCGGATAAGCGTGAGGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTAGCAGAAATAGTATCAAAATTGACTGTTGAAGAAGCTAAATTTCGTGATATACAGGATAGGAAGGTGGAGTTGCAGCAAGCAATTGTCAAAATGGTACAAGGAGGCAGTGCAGATGGTATCCTTCAGGTCCGTGCTGAACGCATACAGTCGGATCTTGAGGAGTTATTTAAGGCTCTGGCTGAACGGTGCAAGAAACATGGGATAGATGTGAAGTCAATTACAATGGTTCAGCTTCCTGCTGGTTGGCAACCTGGAATTCCAGAGGGAGCAGCTCTTTGGGATGAAGAGTGGGATAAATTTGAGGATGAAGGATTTGCTAATGATCTCACTTTTGCATCTTCAAAACCGAATCCTGCATTTATTGATGGAGAACAAAATTTATCTGATGATAATTCTGTTCATGGTTCACCTGTGAATGCAAATGGGAAGCAAGAAAATTCTGCTAATGGTGATTATACAGTTGAGGATGAATCCTATGCACACAGTGAAGATGACTTGGCAAGAAGCCCCCATAGTCTAGCTGGGAGGAGTACGTTGGGTAGTCCTTCTCGAGACTTTTCAAATGCTCATTTTGGAAAAAGTTTCGAAGCAGATGCAGAAACACACAGAAGTTTTGATGAATCAACCTGGGGTGCATTTGACAACAACGAAGATGTGGACTCAGTGTGGGGTTTTAACACTAAGACCAAGGACTCTGACTTCGAGCAGGGAGATTTCTTTAAATCCGACGATTTTGGTATAAACCCAGTTAGAACAGGATCTACACATACAGATGGCACGTTCCAGTCAAAAAGCCCATTTGCTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAATTTGCTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAGTTCGGAAACTCTCCAAGGTACAGTGAGGCAGGGGATCACTTCTTTGACATGTCAAGGTTTGATTCCTTCAGGCACGAAAGTGGATATTCTCCACAACCAGAGAGGCTCACGAGATTTGATTCCATAAGTAGTAGCAGCAAGGATTTTGGTTACAATAATGATAAATTCACAAGGTTTGATTCCATAAGTAGCAGCAAGGATTTTGGCTACAATAATGATAAATTCACAAGGTTTGACTCCATAAGTAGCAGCAAGGATTTTGGCTACAATCCTGAGACGCTCACAAGGTTTGATTCCATGAGTAGCAGCACTGATTTGGGCTTCGGTCGACAGGGACATGCAAGGTTTGACTCAATTAGTAGCACCAAGGACTTCGGTCACAGTGGTCCGTTCTCTTTTGATGACTCTGATCCATTCGGCTCCTCTGGCCCTTTTAAGGTCTCTTCAGAAAATCATTCTCCGAAGAAAGGTTCAGATAACTGGAGTGCATTCTAG

Predicted protein sequences of Glyma06g01930

Limit To All Plant Sequences

>Glyma06g01930.1   sequence type=predicted peptide   gene model=Glyma06g01930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQFESFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQQRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQNPGMRPPQSMPAGGGLHPQQGVAGPDISRGVNMGGHSFSNPGVSNDWNNVRPGMVATRPAGMIPSAALPSSTSPVSPMPQSSPISPMPQSTTVNTKALGVSGNGFSSNSVLGNDFFSDASSTQKQEPAGQSYSVSNVSSAIVPVSTASQPASKQNSLDSLQGAYSSMLPANSQFQRPQSAPITTQQISPPASSSPHTPSGMTAGLGNANSDNSQLSWPKMKPTDVQKYTKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLSLKEFCFALYLMERYREGRPLPQSLPSNVMFDETLMSMTGQPKSAYGNAAWGIGQGFRQQQGIPGARPVAPTAGLRPSVHGSFARADGTQQPNQQKSGTPVLEDSFLNGEQNILNSKPQEAATAEKKFEETQNVILDSKEKIELYRNKMQELVLYRSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIVSKLTVEEAKFRDIQDRKVELQQAIVKMVQGGSADGILQVRAERIQSDLEELFKALAERCKKHGIDVKSITMVQLPAGWQPGIPEGAALWDEEWDKFEDEGFANDLTFASSKPNPAFIDGEQNLSDDNSVHGSPVNANGKQENSANGDYTVEDESYAHSEDDLARSPHSLAGRSTLGSPSRDFSNAHFGKSFEADAETHRSFDESTWGAFDNNEDVDSVWGFNTKTKDSDFEQGDFFKSDDFGINPVRTGSTHTDGTFQSKSPFAFDDSVPATPVSKFAFDDSVPATPVSKFGNSPRYSEAGDHFFDMSRFDSFRHESGYSPQPERLTRFDSISSSSKDFGYNNDKFTRFDSISSSKDFGYNNDKFTRFDSISSSKDFGYNPETLTRFDSMSSSTDLGFGRQGHARFDSISSTKDFGHSGPFSFDDSDPFGSSGPFKVSSENHSPKKGSDNWSAF*

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