Glyma06g01880 - SoyBase

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Report for Sequence Feature Glyma06g01880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1188650
stop:	1192773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G42480	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr1:15936297-15938692 FORWARD LENGTH	SoyBase	E_val: 1.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3782	KOG	Predicted membrane protein, contains type II SA sequence	JGI		ISS
PTHR13341	Panther	MIR-INTERACTING SAPOSIN-LIKE PROTEIN	JGI		ISS
PTHR13341:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF11938	PFAM	Protein of unknown function (DUF3456)	JGI		ISS
UniRef100_G7J5Y0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Canopy-like protein n=1 Tax=Medicago truncatula RepID=G7J5Y0_MEDTR	SoyBase	E_val: 3.00E-94	ISS
UniRef100_I1K7B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7B2_SOYBN	SoyBase	E_val: 2.00E-136	ISS

Expression Patterns of Glyma06g01880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01880

Paralog	Evidence	Comments
Glyma04g01785	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g016200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01880

Limit To All Plant Sequences

>Glyma06g01880.1   sequence type=CDS   gene model=Glyma06g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGTCGATGTCAATGTTGTATATGTGTCTCTTCACACTCACACTCGTCGTCGGAATGTTATCTATGCTATCTGATGCCGTTGATGACAAATGTGCCGCCTGCAAAGCCGTCGCGGAGGAGCTAGAGATTGGGCTTTCCACTGAGAGGCCACGAAATCACTTGGATATGCGCCATCGCTTAGACTCCAAAGGCCAGCGTGAAGGAAAGCTAATCGATTACAGAGTTAGCGAACTAAGAGTCGTTGAACTTCTTGATGGCCTTTGCGAAAAGATGCAAGATTATACACTCAAGATAGATACAAATACCTATGAATGGTTCAAAGTGGATAGCTGGGATAACCTCACAACAAATAAGCAAGAAGCTCGGGCATATTCAAAAGATATATCTTCTTATTGTGGAAGGTTACTTGAAGAAACAGAGGATGAGTTTGCTGAATTGATCAAAAAAGGATCTGTTAAAGTGGGAGGTGTGAGCAAAGTTCTTTGTCAAGATTTGAGCAAGCATTGCAGTCAAATGAGTGTATCATATGCCGCAGAGGTTGATGACGATGGACATGATGGAGAGCTCTAA

Predicted protein sequences of Glyma06g01880

Limit To All Plant Sequences

>Glyma06g01880.1   sequence type=predicted peptide   gene model=Glyma06g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMSMSMLYMCLFTLTLVVGMLSMLSDAVDDKCAACKAVAEELEIGLSTERPRNHLDMRHRLDSKGQREGKLIDYRVSELRVVELLDGLCEKMQDYTLKIDTNTYEWFKVDSWDNLTTNKQEARAYSKDISSYCGRLLEETEDEFAELIKKGSVKVGGVSKVLCQDLSKHCSQMSVSYAAEVDDDGHDGEL*

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