Glyma06g01820 - SoyBase

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Report for Sequence Feature Glyma06g01820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1151795
stop:	1155915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39200	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr2:16356255-16359797 REVERSE LENGTH=576	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_I1K7A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1K7A5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K7A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1K7A5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01820

Paralog	Evidence	Comments
Glyma04g01730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g015700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01820

Limit To All Plant Sequences

>Glyma06g01820.1   sequence type=CDS   gene model=Glyma06g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGGTGGTGCTACTGCAGAAAGAAGCTTAGAGGAAACACCCACATGGGCAGTAGCTGCTGTTTGCTCAGTGTTCGTCATCATCTCTGTATTAATTGAACACGGAATCCATTCACTTGGAAAGTGGTTTCAAAAACGACATAAGAAGGCCATGAATGAAGCCTTGGAGAAAATCAAATCGGAATTAATGTTATTAGGATTCATATCCCTATTAATAACTTTTGGTACACAATATATTGCGAAGATATGCATCCCTGTGTCAGCCGGTGACATAATGCTTCCATGCAAGAAGGTGGAAGTGTCAGATTCAGATGATGACTCAAATGACAGAAGGAAGCTACTTTCTTTTGACGACAACATGGAATGGCGTCGAGTTTTAGCAGCTGCGTCTGGGGGTGACTATTGCTCACAAAAAGGTAAAGTGTCTTTGATCTCTCAGTCTGGGGTGCACCAGTTGCATATATTTATATTCGTCCTCGCTGTTTTTCACATTTTCTACAGCGTCATGACTATGGTACTAGCCCGAGCAAAAATGAAGAAATGGAAGGCTTGGGAAGCGGAAACATCTTCCCTGGAGTATCAATTTACAAATGATCCTTCAAGGTTCAGGTTTGCGCATCAAACATCATTCGTTAGGCGTCACTCTGGTTGGTCTAGGATGCCAGGAATTCGATGGATAGTGGCATTCTTCAGGCAATTCTTCGGTTCTGTCAGTAAGGTGGATTACATGACCATGCGGCACGGATTTATTAACGCACATTTTGCTCCGGATAGCAAATTTGACTTTCAAAAATACATTAAGAGATCCATGAAGGATGACTTTAAAGTGGTCGTGGGTATAAGCATTCCGTTATGGGTTTTTGCAATCGTCTTTATGCTTGTGAACGTTTACAAATGGTACACGCTCACTTGGCTATCATTAGCACCACTAGTGATACTTCTATTAGTGGGCACCAAGCTTGAACTTATAATCATGGAAATGGCCCAACAAATCCAAGATCGAGCCACAATTGTTAGAGGAGTCCCTATTGTAGAGCCAAACAACAAGTATTTTTGGTTTAACCGGCCACAGTGGATTATCTTCTTAATCCACTTTACCTTATTCGAGAATGCATTCCAAATAGCCTTTTTCTTGTGGACATGGTATGAGTTTAAGATCACATCTTGCTTCCATGAAAGCTTGCCGCTAATACTGACAAGGGTTGTCCTTGGAATAGCCTTACAAGTCGTGTGCAGCTACATCACATTTCCTCTCTATTCCCTAGTAATACAGATGGGATCTCACATGAAGAAAGCAATCTTTGAGGAGCAAACTGCAAAGGCACTTAAGAAGTGGCAAAAGGCTGCAAAGGACAAGAGGAAGTTAAGGAAAGCAGGGATAGATATGAGTGGGGAAACAACACCAAGCCAAGGCACATCACCCTTGCATTTGCTTCAAAAGTACAAGCCAAGCCACACAGACACCGATAGTGTTCTCTACTCTCCACGATCATACCAATCTGACACTGACTTGTCTGAGACAGAGGGATCTTCACACCAATTGAATGAAATAACACAAACGCATCAAGCTCCAAGGAATGGAGAAACTCATAATATCGATTTTTCCTTTGTGAAGCCTTAA

Predicted protein sequences of Glyma06g01820

Limit To All Plant Sequences

>Glyma06g01820.1   sequence type=predicted peptide   gene model=Glyma06g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGGATAERSLEETPTWAVAAVCSVFVIISVLIEHGIHSLGKWFQKRHKKAMNEALEKIKSELMLLGFISLLITFGTQYIAKICIPVSAGDIMLPCKKVEVSDSDDDSNDRRKLLSFDDNMEWRRVLAAASGGDYCSQKGKVSLISQSGVHQLHIFIFVLAVFHIFYSVMTMVLARAKMKKWKAWEAETSSLEYQFTNDPSRFRFAHQTSFVRRHSGWSRMPGIRWIVAFFRQFFGSVSKVDYMTMRHGFINAHFAPDSKFDFQKYIKRSMKDDFKVVVGISIPLWVFAIVFMLVNVYKWYTLTWLSLAPLVILLLVGTKLELIIMEMAQQIQDRATIVRGVPIVEPNNKYFWFNRPQWIIFLIHFTLFENAFQIAFFLWTWYEFKITSCFHESLPLILTRVVLGIALQVVCSYITFPLYSLVIQMGSHMKKAIFEEQTAKALKKWQKAAKDKRKLRKAGIDMSGETTPSQGTSPLHLLQKYKPSHTDTDSVLYSPRSYQSDTDLSETEGSSHQLNEITQTHQAPRNGETHNIDFSFVKP*

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