Glyma06g01810 - SoyBase

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Report for Sequence Feature Glyma06g01810

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1141814
stop:	1148155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33640	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr2:14239500-14242240 FORWARD LENGTH=565	SoyBase	E_val: 0	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1311	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7J5Y8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase AKR1 n=1 Tax=Medicago truncatula RepID=G7J5Y8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339E8C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339E8C related cluster n=1 Tax=unknown RepID=UPI0002339E8C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01810

Paralog	Evidence	Comments
Glyma04g01720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g015600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01810

Limit To All Plant Sequences

>Glyma06g01810.1   sequence type=CDS   gene model=Glyma06g01810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGCGTCATGGATGGGAGCTCCCCTTTCACACTTTTCAGGTCGTGGCTATAACTGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGGCTCTCTCTGTGTTCTTTCTTTATGTTCGATGCACTGCCATTGATCCCGCCGACCAGGGAGTCATGGTTGATTGTGACAAGACATCAAAGAATAGATCAAAACTTGATGAAGAGTTGGCAGAACCCAGCAAGATGGGACTAAAGGGTGAAGGAATGTCTGATCGTCACAATTCAAGTTGGTGCTCTAAAGTTGGGTGTTTCTTCTGTAGTTTCCTTGTTAGAGAAGATTGCCGCAGTAATGAAGATATTAGTCTACAGCAACAATCTGGAGAAGAGGAGGCTTTGTTCTGCACTTTGTGCAATGCTGAGGTTCGGAAGTTCAGTAAGCATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTGATCACCATTGTCGGTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGGCTTATAGTTGAATGTGGAGTTGGGATTGCAGTACTTGTCAGATGCTTTGTTGACAAGAAAGGTACAGAGAATCAGATTGCTGAAAAACTTGGAGCTGGGTTCTCTCGAGTCCCATTTGCTATTATTGTGGCCATATGCACAGCAGTTTCATTCCTTGCAACTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAGGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTCCTACTAGTTCAGCTATCACTGCAATAAGTGGAAGAAGCTCTGTTGGAATGAGTATACAGTACAAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCGGATGAAATTATACCACATTTGGAGCCAGGACGCCTACCATCCACTGTTGATCCAGATGCAGTACAATCACCTGACAAAGGGAGAAAAATGAACCAGCGCCCTGTGCGAATAAGTGCATGGAAACTTGCAAAATTGGATTCTAATGAGGCAACTAAGGCAGCTGCTAAGGCCAGAGCATCATCGTCTGTGCTTCGTCCAATTAGTTCTCGACCTCATGCATATGATGTGGATCATTTATCCAGTAGCAATGTGAGTGGAAGAAGCAGCCCAATTAGCAATCAAGGATTTCATATCAAATACGATACAGCGGGGACATCAAGGTTATCTCCTTCCAAGAGCTCATACCCTCCTAGTCATGCAAGCAAGGAAGACATCGATTCTTCATGTCAACACAGTATGAGTAACATTAGCAGTCCACAAGTCTCCAACCTTACTCCTTCACCAATGCAGAGGCCAAGTTTGAACAGAGACCATTTCAACCCCATGTATCAACAACCATCGGGAAATCAGTCTCCTTCGTCAGGTAAAGGAATTGAAGGGAACATAAATCCAGTTCACGACAATGTGGCACGTGCACCAATGAGAAGCAACACCTTAGGTGTTTCAGATAATAGAAGATCGTCTGTGTTTTGGGATCAAGAAGCTGGACGCTTTGTCTCATCCTCATCAAGAGGTCCCGGCAGTTCTCAGATTCCCGGAACAGAGTTATTGTACACGGGCCGTTCTATATTTTTTGGCAGCCCCGTTGTGAATGAACAGCCAAGTACGGGAACAAGAAGTAGCAGTTCAGTAGTAGCTGGTATTCCGGATAGAGATTCTTCTACATTAAGGGATTTTCAGCAAGGTAGATCACATAGGGGTGGCCAGCTTCCTGTGTTTGTTCCTGGCTATGCCCAGCAAAACAAGTTCCCTTAG

Predicted protein sequences of Glyma06g01810

Limit To All Plant Sequences

>Glyma06g01810.1   sequence type=predicted peptide   gene model=Glyma06g01810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARRHGWELPFHTFQVVAITVFFLLSIAYYAFFAPFLGKDIYEYVAIGVYSVLALSVFFLYVRCTAIDPADQGVMVDCDKTSKNRSKLDEELAEPSKMGLKGEGMSDRHNSSWCSKVGCFFCSFLVREDCRSNEDISLQQQSGEEEALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGKKNYITFVCLMAVSLVWLIVECGVGIAVLVRCFVDKKGTENQIAEKLGAGFSRVPFAIIVAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTLSEPPGPSVDGGEQQSLPSSPTSSAITAISGRSSVGMSIQYKGAWCTPPRIFMDHPDEIIPHLEPGRLPSTVDPDAVQSPDKGRKMNQRPVRISAWKLAKLDSNEATKAAAKARASSSVLRPISSRPHAYDVDHLSSSNVSGRSSPISNQGFHIKYDTAGTSRLSPSKSSYPPSHASKEDIDSSCQHSMSNISSPQVSNLTPSPMQRPSLNRDHFNPMYQQPSGNQSPSSGKGIEGNINPVHDNVARAPMRSNTLGVSDNRRSSVFWDQEAGRFVSSSSRGPGSSQIPGTELLYTGRSIFFGSPVVNEQPSTGTRSSSSVVAGIPDRDSSTLRDFQQGRSHRGGQLPVFVPGYAQQNKFP*

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