Glyma06g01800 - SoyBase

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Report for Sequence Feature Glyma06g01800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1135845
stop:	1140426
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33670	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr2:14245138-14247879 FORWARD LENGTH=501	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_I1K7A3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein (Fragment) n=1 Tax=Glycine max RepID=I1K7A3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233976B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233976B related cluster n=1 Tax=unknown RepID=UPI000233976B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01800

Paralog	Evidence	Comments
Glyma04g01710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g015500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01800

Limit To All Plant Sequences

>Glyma06g01800.1   sequence type=CDS   gene model=Glyma06g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGAGGAGGAGAAGGCGGTGACAGCAGGCAGCTAGATCTCACACCTACATGGGCCGTCGCTGCGGTTTGTGCAATTATCGTTATCATTTCTATACTCTTGGAAAAAATTATACACAAATTCGCAAAGGTGTTTGAAGAGAGAAAGAAGCATGCATTGCTAGAAGCTCTTGAAAAGATTAAAGCCGAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCCCTGTCTTCCCCTTGAAGAACGTCATGGAGGGGCTCCTGCAACCGAACATGGAGCTCAGACAGAGGAGGGTGGTGGTGGTGGTGGTGAGGCCGAAGGTGGTGGCCATCACCGCAGGCTTTTATCATATGAGCGTAGGTTTCTAGCAGCTGAGGGTGGAGGCCAAAGTTGTAATCCGGGATACACGCCTCTTATATCAGTGTCCGGATTGCATCAGCTACACATTTTTATATTTTTCTTGGCTGTCTTCCATGTGATATACAGTGCCATAACAATGACGCTTGGAAGAGCAAAGATTCGTGGATGGAAGGAATGGGAGGAAGACCATATCGTGGATCAAGATGCCTTGAATGATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTTGTATGCTTTTTTCGACAATTTTTCAGATCTGTTCGTAGGGCCGACTACTTGACCATGAGACATGGATTTGTGACTGTTCATTTAGCACCGGGAAGTAAGTTTGATTTTCAAAAATATATCAAGAGGTCATTAGAAGATGACTTTAAGGTAGTTGTAGGAATCAGTCCACTACTTTGGGGATCAGTGGTGTTATTCTTGCTTGTGAATGTCCATGGATGGCATGCTGCTTTTTGGGTGTCTTTTCTTCCACTAGTGGTGATTCTGGCCGTTGGAACAAAGCTTCAAGCAATTATAACTCGAATGGCACTTGACATATCAGAAAGGCATGCTGTAGTGCAGGGAATCCCTCTTGTGCAAGTCTCTGACAAGTATTTTTGGTTTGCATGGCCTCAGTTAGTTCTTTATCTCATCCATTATGTCCTCTTTCAGAATGCATTTGAGCTGACATACTTCTGGTGGACATGGTATGAATTTGGTTGGGCATCTTGCTTCTACGAGGATGATAGTCTCATGATTTTTAGAGTAGCTCTTGGGTTAGGAGCTCAAGTGGTTTGCAGTTATGTGACACTTCCACTATATGCGCTTGTTACTCAGATGGGGTCGACGATGAAGAAGTCAATATTTGATGAGCAAACATCCAAGGCACTGAAACAGTGGCATAAGAATGCTCTGAAGAAGAAAGTATCCAAGGGACGCACCGAAACTCGAACGTTAGGTGAGGCTGTGGGCCCAGGAGATCATTCACCGGAGCAATCGCCGAGGTCAACGGGAGCCGGAGAAACAGAAATGGCTGAGCAGAGTGCCACCATAGTCACCACCCCCTATGATAATCGCGACCTTCTAAGTGAACCGTGA

Predicted protein sequences of Glyma06g01800

Limit To All Plant Sequences

>Glyma06g01800.1   sequence type=predicted peptide   gene model=Glyma06g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGGEGGDSRQLDLTPTWAVAAVCAIIVIISILLEKIIHKFAKVFEERKKHALLEALEKIKAELMVLGFISLLLTFGQNYISKMCIPAKYARTMLPCLPLEERHGGAPATEHGAQTEEGGGGGGEAEGGGHHRRLLSYERRFLAAEGGGQSCNPGYTPLISVSGLHQLHIFIFFLAVFHVIYSAITMTLGRAKIRGWKEWEEDHIVDQDALNDPRRFRLTHETSFVRDHNSIWTKTPVSFYFVCFFRQFFRSVRRADYLTMRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWGSVVLFLLVNVHGWHAAFWVSFLPLVVILAVGTKLQAIITRMALDISERHAVVQGIPLVQVSDKYFWFAWPQLVLYLIHYVLFQNAFELTYFWWTWYEFGWASCFYEDDSLMIFRVALGLGAQVVCSYVTLPLYALVTQMGSTMKKSIFDEQTSKALKQWHKNALKKKVSKGRTETRTLGEAVGPGDHSPEQSPRSTGAGETEMAEQSATIVTTPYDNRDLLSEP*

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