Glyma06g01790 - SoyBase

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Report for Sequence Feature Glyma06g01790

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1129759
stop:	1134353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76400	AT	Annotation by Michelle Graham. TAIR10: Ribophorin I \| chr1:28658713-28661672 REVERSE LENGTH=614	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004576	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oligosaccharyl transferase activity	SoyBase	N/A	ISS
GO:0004579	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	SoyBase	N/A	ISS
KOG2291	KOG	Oligosaccharyltransferase, alpha subunit (ribophorin I)	JGI		ISS
PTHR21049	Panther	RIBOPHORIN I	JGI		ISS
PF04597	PFAM	Ribophorin I	JGI		ISS
UniRef100_G7J5Z1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit n=1 Tax=Medicago truncatula RepID=G7J5Z1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7A1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01790

Paralog	Evidence	Comments
Glyma04g01690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g015400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01790

Limit To All Plant Sequences

>Glyma06g01790.2   sequence type=transcript   gene model=Glyma06g01790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTTCTTGTGACTGTATTAAAAAATGATTTCGTGGAACTGGTGATTTTTTGTAGACGAAGAATAACTTGAATTTATTATTTTACTTGCATTGTTAATTTTATCAAGGGTGGACATACTCTAGTTGGAAGTGGTAAATTACTCGCTAACAGGGAAGGGGAGTTGAACAAGAAACAGCAGTGCCTGGCGAAGAAGAGAAAGAAAACAATCATGAGCTTCATTCTGTTTCCGATTCTCTTTGCATTTACCTTTCTGTCCTCGCCCGTTCTCTCTGCTTCGGATCTGGTCCTCGCCAAGGTTGACCGTCGCATTGATCTGACTTCACAGATTGTGCGCATCACTACTTCACTAAAGGTGCAGAATACGGGATCTGATGTTGTGTCTGAGATTTTGCTGTCCTTTCCTGAGAACCAGGCAAGTAACTTGGCATACTTGAAGGCAACACTTGGTGATGGGAAGGGAAAATCAAAACCATCTTCTGGTGTTGGTTTACCTGTCGAAGTTGTCCGGCCTAAAGATGTGCCACCTTCCTTGACAATTTATTCCGTGTCTTTACCTAAGGGGCTTGGGAAGGGAGATAGTCTGACGTTGGATGTCTTGGCTGTTTTTACCCACTCATTGCAACCATTTCCAGAGAAAATCAACCAGGCTGACATCCAGCTTCTACTGTTTCAAGAAAGTGCACACTATCTCTCCCCATATGCAGTCAAGGTCCAATCACTCACTGTTAAATTGCCTGATGCAAGGATAGAGTCCTATACAAAACTAGAAAATGCAAAACTTCAGGGATCTGAATTAAAATATGGTCCATATGAAAATCTTCCTCCATTTTCATACCTGCCAATAGTTATTCACTTTGAGAATAACCAACCCTTTGCTGTTGCTAAAGAGTTGGTTCGAGAGATCGAAATTTCCCATTGGGGCAATGTACAGATCACAGAGCATTACGATATTATCCATGCTGGTTCTCAGAGCAAAGGAGAATTTTCTAGGCTTGACTATCAGACCAGGCCATTTTTAAGAGGTGCATCAGCCTTTAGGCGTCTTGTTGCCAAGCTACCTCCAAGAGCTCATTCTGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGTTTATGGGGTGACTCAAAAAAGACAGAACTGGAGATTGAACCTAGGTACCCTATGTTTGGTGGCTGGAAAACTGCCTTTACCATTGGATATGGCTTGCCACTTGGGGACTTCTTATTTGGATCGGATGGAAAGCGCTTCCTTAACATCTCTTTTGGTGCCCCTATTAATGAGTTGGTCATTGACACACTATTTGTGAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATTTCAGTGTCTGTTCCATTTCCTGTGAAACAATCGGAGGAGACAAAGCTTTCCCACTTGGATATTGTTGGTAGACCTGTTGTTGTGCTGGAGAAGAACAATGTTGTTCCTGAGCATAATGAGCATTTTCAGGTCTACTATAAGTTCAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGCTTTTTCTTTCTGTTTCTTGCTTGCATTGTCTACACGCATGCAGATATATCAATCTCCAAATCTTCTGCATCTTATTTGGCAAAGCTCCAGTTGGACGAGGTAATCAACTTGTTGTATTATGTACAGAGTTCGGTATTTGTAATTGAATATAATACTTGTGTTTTGCTATGCAGGTGCAAGCAACTATTCAGCAGGTCCATGGTATCATTAGCCGTTGCTTAACCGCACATGACAAGCTAGAAATGTCATTACACGATCTTTCAAGGACAGGAGACATTCAAGCCTGTAAAGCAACTCGAAAATCAGTCGATAGCTTACTGAAAGAGCTCTCTAAAGAGTTGAAGCAACCATTGGCAATTTTGCAATCTTCTCCGCAAGCTGCTCAAATATTACCGAAGGTGGAGGAACTTGTTACCAAGGAGAGAGAGTTGCAGGATAAACTTCTAGTAAAACACTCTACAGTTGTAGACGGCTATGAGAAGAAGTCAGCAGGAAGGGAAATTGAGAATCGGATTGCTTCACAACAGCTGAAAATTACTGCTTTGAGACGGGAGATTGATGATCTTATGGACTTGATTGATGAGATATGATACGTGACTATGCTGCTCGAGATGATGATAATATGGCTCTCATTTTGACCTTGTTTTATAGTTGCAAAGAGATTAGCGATACTTCTGACGGTTGGAATTTTGGTGCAGTCTATTATTGTCTAGACTAAGGATCTCATCTTAACTATCGCTAATTTTATATCCATGCTTATCTATACCTATGTGAAAAAATGGATTGCATGCACTCCTAAATGGTCGTTAATACCCTTGAACCCTTTGGTTCAAGTTATGACTCGAATCTTGTGTTTCACAAATGTACTAAATCACTCGAGTGCATGTCTGGAAAAATTATTTTTTTCAAAAGTTCTTAGGCTTGATTATAATATTGCTGGTTTTTAATATCTTGCGAGTTTTTTAGACAAATGATATTTACACTCAACTTTATTAATAAATTCACC

Coding sequences of Glyma06g01790

Limit To All Plant Sequences

>Glyma06g01790.1   sequence type=CDS   gene model=Glyma06g01790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCATTCTGTTTCCGATTCTCTTTGCATTTACCTTTCTGTCCTCGCCCGTTCTCTCTGCTTCGGATCTGGTCCTCGCCAAGGTTGACCGTCGCATTGATCTGACTTCACAGATTGTGCGCATCACTACTTCACTAAAGGTGCAGAATACGGGATCTGATGTTGTGTCTGAGATTTTGCTGTCCTTTCCTGAGAACCAGGCAAGTAACTTGGCATACTTGAAGGCAACACTTGGTGATGGGAAGGGAAAATCAAAACCATCTTCTGGTGTTGGTTTACCTGTCGAAGTTGTCCGGCCTAAAGATGTGCCACCTTCCTTGACAATTTATTCCGTGTCTTTACCTAAGGGGCTTGGGAAGGGAGATAGTCTGACGTTGGATGTCTTGGCTGTTTTTACCCACTCATTGCAACCATTTCCAGAGAAAATCAACCAGGCTGACATCCAGCTTCTACTGTTTCAAGAAAGTGCACACTATCTCTCCCCATATGCAGTCAAGGTCCAATCACTCACTGTTAAATTGCCTGATGCAAGGATAGAGTCCTATACAAAACTAGAAAATGCAAAACTTCAGGGATCTGAATTAAAATATGGTCCATATGAAAATCTTCCTCCATTTTCATACCTGCCAATAGTTATTCACTTTGAGAATAACCAACCCTTTGCTGTTGCTAAAGAGTTGGTTCGAGAGATCGAAATTTCCCATTGGGGCAATGTACAGATCACAGAGCATTACGATATTATCCATGCTGGTTCTCAGAGCAAAGGAGAATTTTCTAGGCTTGACTATCAGACCAGGCCATTTTTAAGAGGTGCATCAGCCTTTAGGCGTCTTGTTGCCAAGCTACCTCCAAGAGCTCATTCTGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGTTTATGGGGTGACTCAAAAAAGACAGAACTGGAGATTGAACCTAGGTACCCTATGTTTGGTGGCTGGAAAACTGCCTTTACCATTGGATATGGCTTGCCACTTGGGGACTTCTTATTTGGATCGGATGGAAAGCGCTTCCTTAACATCTCTTTTGGTGCCCCTATTAATGAGTTGGTCATTGACACACTATTTGTGAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATTTCAGTGTCTGTTCCATTTCCTGTGAAACAATCGGAGGAGACAAAGCTTTCCCACTTGGATATTGTTGGTAGACCTGTTGTTGTGCTGGAGAAGAACAATGTTGTTCCTGAGCATAATGAGCATTTTCAGGTCTACTATAAGTTCAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGCTTTTTCTTTCTGTTTCTTGCTTGCATTGTCTACACGCATGCAGATATATCAATCTCCAAATCTTCTGCATCTTATTTGGCAAAGCTCCAGTTGGACGAGGTGCAAGCAACTATTCAGCAGGTCCATGGTATCATTAGCCGTTGCTTAACCGCACATGACAAGCTAGAAATGTCATTACACGATCTTTCAAGGACAGGAGACATTCAAGCCTGTAAAGCAACTCGAAAATCAGTCGATAGCTTACTGAAAGAGCTCTCTAAAGAGTTGAAGCAACCATTGGCAATTTTGCAATCTTCTCCGCAAGCTGCTCAAATATTACCGAAGGTGGAGGAACTTGTTACCAAGGAGAGAGAGTTGCAGGATAAACTTCTAGTAAAACACTCTACAGTTGTAGACGGCTATGAGAAGAAGTCAGCAGGAAGGGAAATTGAGAATCGGATTGCTTCACAACAGCTGAAAATTACTGCTTTGAGACGGGAGATTGATGATCTTATGGACTTGATTGATGAGATATGA

>Glyma06g01790.2   sequence type=CDS   gene model=Glyma06g01790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCATTCTGTTTCCGATTCTCTTTGCATTTACCTTTCTGTCCTCGCCCGTTCTCTCTGCTTCGGATCTGGTCCTCGCCAAGGTTGACCGTCGCATTGATCTGACTTCACAGATTGTGCGCATCACTACTTCACTAAAGGTGCAGAATACGGGATCTGATGTTGTGTCTGAGATTTTGCTGTCCTTTCCTGAGAACCAGGCAAGTAACTTGGCATACTTGAAGGCAACACTTGGTGATGGGAAGGGAAAATCAAAACCATCTTCTGGTGTTGGTTTACCTGTCGAAGTTGTCCGGCCTAAAGATGTGCCACCTTCCTTGACAATTTATTCCGTGTCTTTACCTAAGGGGCTTGGGAAGGGAGATAGTCTGACGTTGGATGTCTTGGCTGTTTTTACCCACTCATTGCAACCATTTCCAGAGAAAATCAACCAGGCTGACATCCAGCTTCTACTGTTTCAAGAAAGTGCACACTATCTCTCCCCATATGCAGTCAAGGTCCAATCACTCACTGTTAAATTGCCTGATGCAAGGATAGAGTCCTATACAAAACTAGAAAATGCAAAACTTCAGGGATCTGAATTAAAATATGGTCCATATGAAAATCTTCCTCCATTTTCATACCTGCCAATAGTTATTCACTTTGAGAATAACCAACCCTTTGCTGTTGCTAAAGAGTTGGTTCGAGAGATCGAAATTTCCCATTGGGGCAATGTACAGATCACAGAGCATTACGATATTATCCATGCTGGTTCTCAGAGCAAAGGAGAATTTTCTAGGCTTGACTATCAGACCAGGCCATTTTTAAGAGGTGCATCAGCCTTTAGGCGTCTTGTTGCCAAGCTACCTCCAAGAGCTCATTCTGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGTTTATGGGGTGACTCAAAAAAGACAGAACTGGAGATTGAACCTAGGTACCCTATGTTTGGTGGCTGGAAAACTGCCTTTACCATTGGATATGGCTTGCCACTTGGGGACTTCTTATTTGGATCGGATGGAAAGCGCTTCCTTAACATCTCTTTTGGTGCCCCTATTAATGAGTTGGTCATTGACACACTATTTGTGAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATTTCAGTGTCTGTTCCATTTCCTGTGAAACAATCGGAGGAGACAAAGCTTTCCCACTTGGATATTGTTGGTAGACCTGTTGTTGTGCTGGAGAAGAACAATGTTGTTCCTGAGCATAATGAGCATTTTCAGGTCTACTATAAGTTCAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGCTTTTTCTTTCTGTTTCTTGCTTGCATTGTCTACACGCATGCAGATATATCAATCTCCAAATCTTCTGCATCTTATTTGGCAAAGCTCCAGTTGGACGAGGTAATCAACTTGTTGTATTATGTACAGAGTTCGGTATTTGTAATTGAATATAATACTTGTGTTTTGCTATGCAGGTGCAAGCAACTATTCAGCAGGTCCATGGTATCATTAGCCGTTGCTTAA

Predicted protein sequences of Glyma06g01790

Limit To All Plant Sequences

>Glyma06g01790.1   sequence type=predicted peptide   gene model=Glyma06g01790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFILFPILFAFTFLSSPVLSASDLVLAKVDRRIDLTSQIVRITTSLKVQNTGSDVVSEILLSFPENQASNLAYLKATLGDGKGKSKPSSGVGLPVEVVRPKDVPPSLTIYSVSLPKGLGKGDSLTLDVLAVFTHSLQPFPEKINQADIQLLLFQESAHYLSPYAVKVQSLTVKLPDARIESYTKLENAKLQGSELKYGPYENLPPFSYLPIVIHFENNQPFAVAKELVREIEISHWGNVQITEHYDIIHAGSQSKGEFSRLDYQTRPFLRGASAFRRLVAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELEIEPRYPMFGGWKTAFTIGYGLPLGDFLFGSDGKRFLNISFGAPINELVIDTLFVKVVLPEGSKDISVSVPFPVKQSEETKLSHLDIVGRPVVVLEKNNVVPEHNEHFQVYYKFNSLSMLREPLMLISGFFFLFLACIVYTHADISISKSSASYLAKLQLDEVQATIQQVHGIISRCLTAHDKLEMSLHDLSRTGDIQACKATRKSVDSLLKELSKELKQPLAILQSSPQAAQILPKVEELVTKERELQDKLLVKHSTVVDGYEKKSAGREIENRIASQQLKITALRREIDDLMDLIDEI*

>Glyma06g01790.2   sequence type=predicted peptide   gene model=Glyma06g01790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFILFPILFAFTFLSSPVLSASDLVLAKVDRRIDLTSQIVRITTSLKVQNTGSDVVSEILLSFPENQASNLAYLKATLGDGKGKSKPSSGVGLPVEVVRPKDVPPSLTIYSVSLPKGLGKGDSLTLDVLAVFTHSLQPFPEKINQADIQLLLFQESAHYLSPYAVKVQSLTVKLPDARIESYTKLENAKLQGSELKYGPYENLPPFSYLPIVIHFENNQPFAVAKELVREIEISHWGNVQITEHYDIIHAGSQSKGEFSRLDYQTRPFLRGASAFRRLVAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELEIEPRYPMFGGWKTAFTIGYGLPLGDFLFGSDGKRFLNISFGAPINELVIDTLFVKVVLPEGSKDISVSVPFPVKQSEETKLSHLDIVGRPVVVLEKNNVVPEHNEHFQVYYKFNSLSMLREPLMLISGFFFLFLACIVYTHADISISKSSASYLAKLQLDEVINLLYYVQSSVFVIEYNTCVLLCRCKQLFSRSMVSLAVA*

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