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Report for Sequence Feature Glyma06g01760

Feature Type:gene_model
Chromosome:Gm06
Start:1117296
stop:1120001
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g01760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20830AT Annotation by Michelle Graham. TAIR10: multiple chloroplast division site 1 | chr1:7242933-7244736 FORWARD LENGTH=349 SoyBaseE_val: 5.00E-111ISS
GO:0010020GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast fission SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR19211Panther ATP-BINDING TRANSPORT PROTEIN-RELATED JGI ISS
PTHR19211:SF28Panther gb def: abc transport system atp-binding protein [campylobacter jejuni] JGI ISS
UniRef100_I1K798UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K798_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8GWA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multiple chloroplast division site 1 n=1 Tax=Arabidopsis thaliana RepID=Q8GWA7_ARATH SoyBaseE_val: 2.00E-108ISS

Expression Patterns of Glyma06g01760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01760
ParalogEvidenceComments
Glyma04g01670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g015100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g01760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g01760
>Glyma06g01760.1   sequence type=CDS   gene model=Glyma06g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTGTTTGGACACTGCACTTCCGCTCTCTTTCTCTTCGCCCATGCCTCTACATTAGTAGCAATTGCAGTAGCGCTGCCACTAGAAATCGCATTAGCATCAGAAATCGAATCTCCAATTGGCGCTCTTGCGCCCAACAACTCAAACACGATTCCATCAATTCCATTACCAAATTTCACCATCAACTTGTTCATTCCGTTACCATTCCTCCATTCCTGTTGAATCAAAATGGTGGAAGCAATTTTCCGATTTGGGTATGTGTTGCGGTTGTGGTTTTGGTTGTGGCGGTGAGAATGAGGGTAGTAGTGTCCAGAAAAAAGGAGCGTCCTGGTTCCGTGGCTGATCTAGTTAGACGTGGCCAACTCAGATCTGATAGAAGAGGCATTTCGAGGCCTCTCAAGTATGAAGACCCCTTCAATAATCCCTTTGTCAAGGTTGGCAAAAGCGACTCAACTGTTGAGATGTGCGGAAAGGTTTACCGTTTAGCCCCCATTACTCTAACTCAAGAGCAACAAGCTACTCACCAGAAGAGGAGATTGCGTGCCTACCAGTGGAAGCGACCCACCATCTTCCTTAGAGAAGGGGACTCGGTTCCTCCGGATGTTGATCCCGACACTGTCAGGTGGATTCCGGCTAATCATCCATTTGCTACCACTGCTACTGATTTGGATGAGGACTTGGCACAAAACAATGTGTATCAAAAGCATGGAGTTCCTTTTCGGATTCAAGCTGAACATGAGGCCCTGCAGAAAAAGCTCGAAGCCCTACAAAATGACCAGAAACTTGATAAACTAGTGATAGATCCTATCAATGCTAAAGAATTTGAAAGGCCGTTCAACTCTCACGCCAGATTAAATGATCAAGCAGATAAGAGCTCTGTAAACAATCAGGAGCAGAAACTCAATAAACAAGTGATAGATCCTATCAATGCTAAAGAATTTGAGAGACCATTCAACTCCCACACCAGATTAAATGATCAAGCCGAAAAGAGCTCTGCACACAATCAGGCGAGTGATTCTGACTCCCCAAGAATAGATAGTGGCCCAAATCACTTTGAAAGTACATCATCCGAAGATCCAACTCTTTAG
Predicted protein sequences of Glyma06g01760
>Glyma06g01760.1   sequence type=predicted peptide   gene model=Glyma06g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVWTLHFRSLSLRPCLYISSNCSSAATRNRISIRNRISNWRSCAQQLKHDSINSITKFHHQLVHSVTIPPFLLNQNGGSNFPIWVCVAVVVLVVAVRMRVVVSRKKERPGSVADLVRRGQLRSDRRGISRPLKYEDPFNNPFVKVGKSDSTVEMCGKVYRLAPITLTQEQQATHQKRRLRAYQWKRPTIFLREGDSVPPDVDPDTVRWIPANHPFATTATDLDEDLAQNNVYQKHGVPFRIQAEHEALQKKLEALQNDQKLDKLVIDPINAKEFERPFNSHARLNDQADKSSVNNQEQKLNKQVIDPINAKEFERPFNSHTRLNDQAEKSSAHNQASDSDSPRIDSGPNHFESTSSEDPTL*






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