Glyma06g01700 - SoyBase

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Report for Sequence Feature Glyma06g01700

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1080096
stop:	1084270
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33620	AT	Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein \| chr2:14234749-14236563 FORWARD LENGTH=351	SoyBase	E_val: 1.00E-66	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0048438	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral whorl development	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9R8T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8T3_RICCO	SoyBase	E_val: 6.00E-73	ISS
UniRef100_I1K793	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K793_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01700

Paralog	Evidence	Comments
Glyma04g01620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g014600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01700

Limit To All Plant Sequences

>Glyma06g01700.2   sequence type=transcript   gene model=Glyma06g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTAAATCCAAGATCTCCCTCATGTAAAACCTGTAATTTCATCCAATTTGTGAAGTTTTTTTTACTGCTTGGCTGGATTGCAAAAACTAGGGTTTTTGAATTTTGTCTCTTGTTTTTCCCTCTTTCCGTAGGCGTTTAGATTTTGGGAGCGAGCGAGGTAATTTTTTTTTTTTTTTGCAATCAGAGCCTCACAGGAGAGTAAAAGGATGCGTGAGTTTCATTTATGTTGACTGATAGTAGAATTTGAAATTTGAATTTGAATTGTAGACGTAGGATTAGAGTAGAAAAAGGAAAGATGATGATTGTATTGCGGCGTGTAGAGAGAGGATTTATCCAATTCCAACTTTGATACTCACTCATACCATAATAGGATCAGGCTAGGGTTTATAATAAGCTGCTGATTGAAACAAATGTTGAAATTGCAGTTGTTGAATCATCTGCACCAGACACCGATTCATTCGACCAAAACATAAGCATGTCCGGATCTGACATGGCAGGGAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACAACAACAACAACAACAACAACAACCTCAGCTTCATCAAAACATGCGTATGGACTATGCTGCTGACGGCACTGCTGTTTTCGCCCCTCCGACCGTTACCGTTAACATTAACGGCGGAGATTCCTCTCCAGCGGTGCCTCCGGGCCTGGGCCTGCCCCAGCCCCAGCCCATGATGGTTAACTCCCCCGAACCAATTAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTGACGGTGGCATGACCTTGGGGGCTTTGAAGACCACCACTCCTCCCGGCGGCGGCGTGCCGGTTGGGCAGTCCGGTGGGGCATTTCCAGCGGGGCCTCTTTCGGATTCGGCCTCAGCTGGTACCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAAAATAAGAAGAATGATAGCTCTAACTCCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACGGTGAACGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGAGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTGTTGGGCGGCGGAGTTGCAGGTCTTCTGATAGCTGCTTCCCCTGTTCAGATTGTTTTGGCGAGCTTTGTTTCTGATGTTCGCAAGCACTTGAAGCGTGCAAAGAAGACGGAGAATGAAAAGGTTTCGACAGCAGGAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGCGAGTCCTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCATGCAACAACACCATCGAAAACAGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAGAAGTACTTGACTCCTCTCACATCTTTGTGTAGTAGGTTTTGGTGTTGTGACAGACACATCAGACTCTACTTGTTATGCTCTATTACTTGGTGTCTTTTATGCTTTAAGCATTTAGGATGCACACCTGTTATATTAGCTTTGTGTAATATTAATTGGAGGAATTTTAGGGATAAAGTATGCGGACTCGTAGCTTAATTTGGTTAGATGTTGTGTTCACTTGGGTGATTCAAGAGGTTCTGGCAGGATCGGGTTAGTATGTAGGATCTTGATGAGATGCCGGTGACTTTGTCATCCGTTAGTTGTAATTTATTGTCGGTCCATATGCCTAAACTTTCTCCTTGTTACCCAGTTGTTCGGTGGTAATAATACTTAATCTGTTTAGCTTCTTTACTTTTTCTTTTCTAAAATACAATTTTCC

Coding sequences of Glyma06g01700

Limit To All Plant Sequences

>Glyma06g01700.1   sequence type=CDS   gene model=Glyma06g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGATCTGACATGGCAGGGAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACAACAACAACAACAACAACAACAACCTCAGCTTCATCAAAACATGCGTATGGACTATGCTGCTGACGGCACTGCTGTTTTCGCCCCTCCGACCGTTACCGTTAACATTAACGGCGGAGATTCCTCTCCAGCGGTGCCTCCGGGCCTGGGCCTGCCCCAGCCCCAGCCCATGATGGTTAACTCCCCCGAACCAATTAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTGACGGTGGCATGACCTTGGGGGCTTTGAAGACCACCACTCCTCCCGGCGGCGGCGTGCCGGTTGGGCAGTCCGGTGGGGCATTTCCAGCGGGGCCTCTTTCGGATTCGGCCTCAGCTGGTACCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAAAATAAGAAGAATGATAGCTCTAACTCCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACGGTGAACGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGAGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTGTTGGGCGGCGGAGTTGCAGGTCTTCTGATAGCTGCTTCCCCTGTTCAGATTGTTTTGGCGAGCTTTGTTTCTGATGTTCGCAAGCACTTGAAGCGTGCAAAGAAGACGGAGAATGAAAAGGTTTCGACAGCAGGAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGCGAGTCCTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCATGCAACAACACCATCGAAAACAGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG

>Glyma06g01700.2   sequence type=CDS   gene model=Glyma06g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGATCTGACATGGCAGGGAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACAACAACAACAACAACAACAACAACCTCAGCTTCATCAAAACATGCGTATGGACTATGCTGCTGACGGCACTGCTGTTTTCGCCCCTCCGACCGTTACCGTTAACATTAACGGCGGAGATTCCTCTCCAGCGGTGCCTCCGGGCCTGGGCCTGCCCCAGCCCCAGCCCATGATGGTTAACTCCCCCGAACCAATTAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTGACGGTGGCATGACCTTGGGGGCTTTGAAGACCACCACTCCTCCCGGCGGCGGCGTGCCGGTTGGGCAGTCCGGTGGGGCATTTCCAGCGGGGCCTCTTTCGGATTCGGCCTCAGCTGGTACCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAAAATAAGAAGAATGATAGCTCTAACTCCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACGGTGAACGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGAGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTGTTGGGCGGCGGAGTTGCAGGTCTTCTGATAGCTGCTTCCCCTGTTCAGATTGTTTTGGCGAGCTTTGTTTCTGATGTTCGCAAGCACTTGAAGCGTGCAAAGAAGACGGAGAATGAAAAGGTTTCGACAGCAGGAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGCGAGTCCTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCATGCAACAACACCATCGAAAACAGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG

Predicted protein sequences of Glyma06g01700

Limit To All Plant Sequences

>Glyma06g01700.1   sequence type=predicted peptide   gene model=Glyma06g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSDMAGREQFTVGMHKPQQQQQQQQQPQLHQNMRMDYAADGTAVFAPPTVTVNINGGDSSPAVPPGLGLPQPQPMMVNSPEPIKRKRGRPRKYGPDGGMTLGALKTTTPPGGGVPVGQSGGAFPAGPLSDSASAGTVKRRGRPRGSVNKNKKNDSSNSSKYSGPGSWFTPHVITVNAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSDVRKHLKRAKKTENEKVSTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTIENSTTPTQSFQGMPWK*

>Glyma06g01700.2   sequence type=predicted peptide   gene model=Glyma06g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSDMAGREQFTVGMHKPQQQQQQQQQPQLHQNMRMDYAADGTAVFAPPTVTVNINGGDSSPAVPPGLGLPQPQPMMVNSPEPIKRKRGRPRKYGPDGGMTLGALKTTTPPGGGVPVGQSGGAFPAGPLSDSASAGTVKRRGRPRGSVNKNKKNDSSNSSKYSGPGSWFTPHVITVNAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSDVRKHLKRAKKTENEKVSTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTIENSTTPTQSFQGMPWK*

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