Glyma06g01580 - SoyBase

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Report for Sequence Feature Glyma06g01580

Feature Type:	gene_model
Chromosome:	Gm06
Start:	997830
stop:	998708
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49330	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr1:18250043-18251038 FORWARD LENGTH=331	SoyBase	E_val: 2.00E-56	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K782	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K782_SOYBN	SoyBase	E_val: 2.00E-159	ISS
UniRef100_Q9XIA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F13F21.24 protein n=1 Tax=Arabidopsis thaliana RepID=Q9XIA0_ARATH	SoyBase	E_val: 9.00E-54	ISS

Expression Patterns of Glyma06g01580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g01580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g013500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01580

Limit To All Plant Sequences

>Glyma06g01580.2   sequence type=CDS   gene model=Glyma06g01580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACGCAATGGACTTAGAAGATCATGAGCATGATCTAACTCTCTCACTCAGGTGTGGTAGTCCAGAGAGAATAACGATACAGTCTTCTCCAATAACTACCCTTCCTCAAACAAACATCTCCTTGGTGGAACTACAAATGTCTTACCCTAATTATTTGGTTTCATCTTCAAACTACAACATTAACCCTTTCTTGGTGTCATGTTCTAACCACAGCATTACTCCTAATTGGTTGGGGTCATCTTCCAACCACAACCCTAACCCTTACCCTAACTTTCCAAGTGGTGGTGGTGCTGCTAATAATAATTATGTTGTGGATGTAAATGCTGCTCCTACGTCCGTTTTGACACGTCGCTCTCGTCGTGGCTCGTCTCAACGGTGGAGCCAAGGAAAGAGCGAAACAGTGCCTGCACCTTTCCCTTGGGCGACGGATCGTCGGGCCACCGTGCACAACCGCAAATATCTATTGCAAAACAATGTTGTGGCCATCAGCGGAAGGTTTGAATGCAAGAGGTGCGAGAAGGAGTTCGAGGTGACGCTTGATCTGGAGGAAAAAGTGAACGAGTTGCGGAAATTCATTGAGAAAGAAAGTGGGTCCATGCATGATAGGGCCCCAGCGGCTTGGGTGAATCCGGTGTTGTCCAAGTGTGTGCATTGCGGAAAAGAAAATAGCGCCAAACCCATCCTTGGGGATAAGAAAAGGGCAATTAATTGGTTGTTCTTGTTGCTGGGACAAATTCTGGGTTTCTGCAACCTTGGTCAACTCAAATATTTCTGCAAGCACACCAACAACCATCGAACTGGTGCCAAAGATCGCCTTCTTTATCTTGCCTACATGACCATCAGCAAACAGCTTGTTCCCGAGTGGTTCGATTAG

Predicted protein sequences of Glyma06g01580

Limit To All Plant Sequences

>Glyma06g01580.2   sequence type=predicted peptide   gene model=Glyma06g01580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNAMDLEDHEHDLTLSLRCGSPERITIQSSPITTLPQTNISLVELQMSYPNYLVSSSNYNINPFLVSCSNHSITPNWLGSSSNHNPNPYPNFPSGGGAANNNYVVDVNAAPTSVLTRRSRRGSSQRWSQGKSETVPAPFPWATDRRATVHNRKYLLQNNVVAISGRFECKRCEKEFEVTLDLEEKVNELRKFIEKESGSMHDRAPAAWVNPVLSKCVHCGKENSAKPILGDKKRAINWLFLLLGQILGFCNLGQLKYFCKHTNNHRTGAKDRLLYLAYMTISKQLVPEWFD*

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