Glyma06g01520 - SoyBase

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Report for Sequence Feature Glyma06g01520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	964153
stop:	971224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34450	AT	Annotation by Michelle Graham. TAIR10: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative \| chr4:16471956-16476795 FORWARD LENGTH=886	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005798	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi-associated vesicle	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030117	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane coat	SoyBase	N/A	ISS
GO:0030126	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG1078	KOG	Vesicle coat complex COPI, gamma subunit	JGI		ISS
PTHR10261	Panther	COATOMER GAMMA SUBUNIT	JGI		ISS
PF01602	PFAM	Adaptin N terminal region	JGI		ISS
PF08752	PFAM	Coatomer gamma subunit appendage domain	JGI		ISS
UniRef100_I1K778	UniRef	Annotation by Michelle Graham. Best UniRef hit: Coatomer subunit gamma n=1 Tax=Glycine max RepID=I1K778_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K778	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coatomer subunit gamma n=1 Tax=Glycine max RepID=I1K778_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01520

Paralog	Evidence	Comments
Glyma04g01470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g013100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01520

Limit To All Plant Sequences

>Glyma06g01520.1   sequence type=CDS   gene model=Glyma06g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGCCGCTTGTGAAGAAAGACGATGACCGCGACGACGAAGCTGAGTATTCCCCCTTTCTGGGACTTGAAAAGGGGTCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGGTTATCATCGTCACAAGCTCTCTCATGAAGGACATGAACAGCAAGATTGATATGTACCGAGCAAATGCCATTCGAGTGCTGTGTCGTATCACTGACGGAACCCTCCTTTCACAAATTGAGAGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAGTTAGTGGCATTCATCTACTCCAGACGAATCCTGAAATTGTAAAAAGATGGAGCAATGAAGTTCAGGAAGCTGTTCAATCAAGAGCAGCCCTTGTACAATTTCATGCACTGGGTTTGCTACATCAGATACGACAGAACGATCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCATGAATCAGGCAATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCAGACATGGTGATTTTTGAAGCTGCCAGGGCAATAACAGAGCTCAATGGCGTAACAAGCCGAGAATTAACTCCAGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTTGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTGATGAACTTCCTGAGTAATATTCTTAGGGAAGAAGGGGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTGATGCAAAGGAAGTGGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACGCAGATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAATATATTCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTCCGTGATAGGGCTACACTTTACCTGGACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATATCCCACTTGTCAATCTGGAGACTAGTTTGAAAAACTATGAACCTTCAGAAGAAGGTTTTGACATTAACTCTGTGCCCAAGGAGGTCAAGTCCCAGCCACTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCGACCATTTCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCCGTGGAGCTCACTGAAGCTGAGACAGAATATGCTGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAACATGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATACCAGCTGGAGGATCTGGAGATTGTTGCAGCAGATTACGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCATGGGAAAGCTTAGGCCCTGATTTTGAGCGAGTGGATGAGTATGGTCTTGGTCCTAGAGAGAGCTTGGCTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTACGGCTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCAATGAAACTGTCTGTCAGATCAGAGGATGAAACAGTCAGCGATGCCATTCATGAGATTGTGGCAAGCGGCTAG

Predicted protein sequences of Glyma06g01520

Limit To All Plant Sequences

>Glyma06g01520.1   sequence type=predicted peptide   gene model=Glyma06g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQPLVKKDDDRDDEAEYSPFLGLEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIHESGNTQSGERPFYDYLESCLRHKSDMVIFEAARAITELNGVTSRELTPAITVLQLFLSSTKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKEVGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDVLKPRIFVLLRRCLFDSDDEVRDRATLYLDTLGGDGSVVETDKDVKDFLFGPFDIPLVNLETSLKNYEPSEEGFDINSVPKEVKSQPLAEKKAPGKKPTGLGAPPSTADAYERMLSTISECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEHVIVTVDASDADEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGVPTVGKFSNILKFIVKEVDPTTGEAEDDGVEDEYQLEDLEIVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLEPCEGTEEVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDAIHEIVASG*

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