Glyma06g01480 - SoyBase

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Report for Sequence Feature Glyma06g01480

Feature Type:	gene_model
Chromosome:	Gm06
Start:	933704
stop:	939426
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16250	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr2:7039682-7042933 REVERSE LENGTH=915	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF797	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7J726	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor kinase n=1 Tax=Medicago truncatula RepID=G7J726_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K773	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K773_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01480

Paralog	Evidence	Comments
Glyma04g01430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g012700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01480

Limit To All Plant Sequences

>Glyma06g01480.1   sequence type=CDS   gene model=Glyma06g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATAGTGTGGCTTGGGTTGTTGTTGCTGGTGCTGAGTCAGGTGACATTGGAGCAGAATGAGCCACTGAGTTCCGTCGAGGAGCGAGAATCGTTGCTCGAACTAAGGGGTTCTCTGGGGTTGAGGAGCAAGGAGTGGCCAAGAAAGCCAGACCCATGTTTAATCTGGGTTGGCATCACGTGCCAGAATGGTCGTGTCGTTGGGATCAATATCTCTGGCTTCAGAAGAACCAGACTTGGGAGGAGGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACCCTCTTGCGGTCCTTCAATGCCTCCAATTTCCCCCTTCCTGGCTCTATTCCTGATTGGTTTGGTCTCTCTCTCCCTTCACTCACTGTGCTTGATCTTCGTTCTTGCTCCATTGTTGATGCTATTCCCTCCACTCTTGGCAATTTAACCAACCTCACTAGTCTCTATCTCTCTGACAACAACCTCATTGGGAATGTTCCTGGGACTTTGGGTCAACTCTTGGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTTACTGGCTCCATACCAGCCTCTTTCGCCTTTCTTGGGAATCTTTCCTCCCTTGACATGTCTGCTAATTTTTTGTCGGGGGCGATTCCCACCGGCATAGGGACTCTTTCCAGGCTGCAGTACTTGAATCTTTCCAACAATGGCCTTTCTTCTTTGCCTGCCGAATTGGGGGGCCTTGCTAGCTTAGTTGACCTTGATCTTAGTGAGAATTCTTTCGTTGGTGGTGGATTGCCTCCTGATTTCACCCGATTGAGGAACTTGAGGAGGATGATACTTGCCAACAGCATGCTCACTGGAGCTCTGCCGGGGAGATTGTTTAGTGATTCGTTGCAGTTCCTAGTGCTGAGGCAAAACAACTTTAGTGGTTCTCTGCCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTCGATGTCTCTGCCAATAACTTCAGTGGTCTGCTTCCTAATTCGACTTCTGCTGCTAATAATGCTACTGCTGCGGTGCTCAATATTTCGCATAATAAGTTTTATGGAGGCCTCACTCCTGCACTCAGAAGGTTTGGTTTCGTTGATCTTTCCCGCAATTATTTTGAAGGCAAGATTCTGGATTACATGCTTAATGTATCTCTAGATATCAACTGCCTCCAGAAAGCGACAAATCAGAGGTCAACGATGGAATGTGCATCATTTTATGCGGAGAGGGGGCTCAGTTTTGATAATTTTGGACAGCCAAATACGACAAAACCTCCCACAGCCGAAAGCTCTGGGAAGAGCAATAAAACTAAGATTATATTGGCAGCAGTCTTTGGTGGAGTGGGTTTAATTGCACTTTTGGTGCTGCTACTGGTTCTGTTGCTTCTGTGTGCTCGTAAGAGGGGTAATTCAAATCAGAGAGGGAATGGTGTGGGTCCTGCTCCTGTTGGCAGCAGTCCTCCAAATCCCGGTGTACTGGTCGACTTTCCAAATGTCGGAGACTCATTTACCTATCATCAGTTGCTCCAGGCAACAGGAGATTTCAATGATGCAAATCTTATCAAACATGGCCACACTGGGGATTTCTTCAATGGTGTTTTGGAAAGTGGGATTCCTGTCGTCATCAAAAGGATTGACATGCGTTCAACTAAAAAGGAGGCTTACCTGTCGGAATTGGACTTCTTTAATAAGGTTTCTCATCAAAGATTTGTTCCTTTGTTAGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAACGCATGACAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACATCTGAAGATGGTACTTTGCAATCATTAGACTGGATAACTAGGTTAAAAATTGCTACTGGAGCAGCAGAGGCACTATCATATCTACATCATGAATGTGTTCCGCCGATTGTTCACAGAGATATTCAAGCAAGCAGTATACTTCTAGACGATAAATATGAAGTTCGGTTAGGGAGCCTAAGTGAATCCTGTGCTCAAGAAGGTGATATTCATCAAAGTAAAATCACCCGGTTTCTGCGGTTGCCTCAGTCTTCTGAACAAGGCACATCTGGTTCATCAACATCAATTTGTGTCTATGACGTTTATTGTTTTGGAAAAGTTTTACTTGAGCTGGTGACGGGTAAGCTGGGAATGAGTGCAGCCAGTGACACCGAAGTAAAGGAGTGGTTTGATCAGATTCTACCTTGCATTAGTATGTACGATAAGGAGCTTGTGACAAAAATTGTTGATCCGTCAATGGTTGTTGATGAGGATTTCTTAGAGGAAGTATGGGCTATATCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAATTCCAGTTCTGCACGGCTTAGAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACTTTGTTTGGTAGTTGGCGTCAGAGTTCTTCGGATGTAACACTTACTCCAGCAGCCTCTGGTACAAAACTAGAAAGAGCTAGTAGTTTAAAGCTGTCAGGAACTACTGGCTCGCAGTCACAGGGTAGTTTCCACAATGGAGGTGAGATTTTGTCATCGCGGAGACGACATTCAAAGGAGATATTGCCAGAGCCATCTGGCGTGCATGATGTAGAGAGGTTGGAGCTTGAATAG

Predicted protein sequences of Glyma06g01480

Limit To All Plant Sequences

>Glyma06g01480.1   sequence type=predicted peptide   gene model=Glyma06g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIVWLGLLLLVLSQVTLEQNEPLSSVEERESLLELRGSLGLRSKEWPRKPDPCLIWVGITCQNGRVVGINISGFRRTRLGRRNPQFAVDALANFTLLRSFNASNFPLPGSIPDWFGLSLPSLTVLDLRSCSIVDAIPSTLGNLTNLTSLYLSDNNLIGNVPGTLGQLLALSVLDLSRNSLTGSIPASFAFLGNLSSLDMSANFLSGAIPTGIGTLSRLQYLNLSNNGLSSLPAELGGLASLVDLDLSENSFVGGGLPPDFTRLRNLRRMILANSMLTGALPGRLFSDSLQFLVLRQNNFSGSLPVELWSLPRLSFLDVSANNFSGLLPNSTSAANNATAAVLNISHNKFYGGLTPALRRFGFVDLSRNYFEGKILDYMLNVSLDINCLQKATNQRSTMECASFYAERGLSFDNFGQPNTTKPPTAESSGKSNKTKIILAAVFGGVGLIALLVLLLVLLLLCARKRGNSNQRGNGVGPAPVGSSPPNPGVLVDFPNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSTKKEAYLSELDFFNKVSHQRFVPLLGHCLENENEKFLVYKRMTNGDLSNCLYYKNTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSESCAQEGDIHQSKITRFLRLPQSSEQGTSGSSTSICVYDVYCFGKVLLELVTGKLGMSAASDTEVKEWFDQILPCISMYDKELVTKIVDPSMVVDEDFLEEVWAISIVARSCLNPKPSRRPPMRYVLKALENPLKVVREENSSSARLRATSSRGSWNATLFGSWRQSSSDVTLTPAASGTKLERASSLKLSGTTGSQSQGSFHNGGEILSSRRRHSKEILPEPSGVHDVERLELE*

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