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Report for Sequence Feature Glyma06g01471

Feature Type:gene_model
Chromosome:Gm06
Start:916164
stop:917388
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g01471
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39260AT Annotation by Michelle Graham. TAIR10: cold, circadian rhythm, and RNA binding 1 | chr4:18274166-18274958 REVERSE LENGTH=92 SoyBaseE_val: 2.00E-44ISS
GO:0000380GO-bp Annotation by Michelle Graham. GO Biological Process: alternative mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG0107 KOG Alternative splicing factor SRp20/9G8 (RRM superfamily) JGI ISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF31Panther SUBFAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_D2D310UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Gossypium hirsutum RepID=D2D310_GOSHI SoyBaseE_val: 1.00E-47ISS
UniRef100_UPI00018C66B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00018C66B2 related cluster n=1 Tax=unknown RepID=UPI00018C66B2 SoyBaseE_val: 4.00E-109ISS

Expression Patterns of Glyma06g01471
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01471 not represented in the dataset
Glyma06g01471 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01471
ParalogEvidenceComments
Glyma04g01421 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01471 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g012600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g01471
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g01471
>Glyma06g01471.2   sequence type=transcript   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTTTGAGTTGCGTGGTGGAGGTTAACCCTAGTTAAGACATTGGACGCTATATAAGAAGGCGGGAAGGGGTAGCCATTATTCTTCGTGCTATTTTCCTTTGTTTCTATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAAGATTACGTGAATTTTTAGGTTTTTAGTGGGTGAAAAAATGGGGGGAGGTTGTGTTGTATCATCCCCTTGCCTTGATATTAATTGTGATAATTTTAGGTTTGGAATATGCGTTGTGGTTTGAGCATCTGTTACTGTTATGGTTGGGTTTTTGACATCTGATAATGAATCTGTGTACTGGAAGGATTACTGGGTCTTGGTCATCCAGATTGAAATACCTGAAAATCCTTGCTACTTATACATCTCAATCTGCTTTGCAGCTTGGTTAGAAGACGATAAGTCCCAAACAAGTGTTCAATGTTCTTTCTTACCAA

>Glyma06g01471.3   sequence type=transcript   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTATTTTCCTTTGTTTCTATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCCGTTAGTCGCAGGGATTGGATCGGATTTGGATTCTCTCATCCCTTCTGATCTGTTTTGCGTTACTTGATCTATGATACTTGTGTTGCTTGATCTATAATGATTCTTTTATTACTCACACCAATCGGTACGTTCATCTTCATCTTTGATTCAAAGGCGAAGATCGATCGGTTCTAATTAATCTGTTTTTTTCTTCTTCTGAATTTCGAGATTCCGTTCCCGATCTGATGCAATTCTATGCTTTTTTGTGTGTTCAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAAGATTACGTGAATTTTTAGGTTTTTAGTGGGTGAAAAAATGGGGGGAGGTTGTGTTGTATCATCCCCTTGCCTTGATATTAATTGTGATAATTTTAGGTTTGGAATATGCGTTGTGGTTTGAGCATCTGTTACTGTTATGGTTGGGTTTTTGACATCTGATAATGAATCTGTGTACTGGAAGGATTACTGGGTCTTGGTCATCCAGATTGAAATACCTGAAAATCCTTGCTACTTATACATCTCAATCTGCTTTGCAGCTTGGTTAGAAGACGATAAGTCCCAAACAAGTGTTCAATGTTCTTTCTTACCAA
Coding sequences of Glyma06g01471
>Glyma06g01471.1   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA

>Glyma06g01471.2   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA

>Glyma06g01471.3   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTCTATGCTTTTTTGTGTGTTCAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA
Predicted protein sequences of Glyma06g01471
>Glyma06g01471.1   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*

>Glyma06g01471.2   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*

>Glyma06g01471.3   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFYAFLCVQVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*






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