Glyma06g01471 - SoyBase

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Report for Sequence Feature Glyma06g01471

Feature Type:	gene_model
Chromosome:	Gm06
Start:	916164
stop:	917388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01471

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39260	AT	Annotation by Michelle Graham. TAIR10: cold, circadian rhythm, and RNA binding 1 \| chr4:18274166-18274958 REVERSE LENGTH=92	SoyBase	E_val: 2.00E-44	ISS
GO:0000380	GO-bp	Annotation by Michelle Graham. GO Biological Process: alternative mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0107	KOG	Alternative splicing factor SRp20/9G8 (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF31	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_D2D310	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Gossypium hirsutum RepID=D2D310_GOSHI	SoyBase	E_val: 1.00E-47	ISS
UniRef100_UPI00018C66B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C66B2 related cluster n=1 Tax=unknown RepID=UPI00018C66B2	SoyBase	E_val: 4.00E-109	ISS

Expression Patterns of Glyma06g01471

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01471 not represented in the dataset	Glyma06g01471 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01471

Paralog	Evidence	Comments
Glyma04g01421	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01471 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g012600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01471

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01471

Limit To All Plant Sequences

>Glyma06g01471.2   sequence type=transcript   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTTTGAGTTGCGTGGTGGAGGTTAACCCTAGTTAAGACATTGGACGCTATATAAGAAGGCGGGAAGGGGTAGCCATTATTCTTCGTGCTATTTTCCTTTGTTTCTATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAAGATTACGTGAATTTTTAGGTTTTTAGTGGGTGAAAAAATGGGGGGAGGTTGTGTTGTATCATCCCCTTGCCTTGATATTAATTGTGATAATTTTAGGTTTGGAATATGCGTTGTGGTTTGAGCATCTGTTACTGTTATGGTTGGGTTTTTGACATCTGATAATGAATCTGTGTACTGGAAGGATTACTGGGTCTTGGTCATCCAGATTGAAATACCTGAAAATCCTTGCTACTTATACATCTCAATCTGCTTTGCAGCTTGGTTAGAAGACGATAAGTCCCAAACAAGTGTTCAATGTTCTTTCTTACCAA

>Glyma06g01471.3   sequence type=transcript   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTATTTTCCTTTGTTTCTATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCCGTTAGTCGCAGGGATTGGATCGGATTTGGATTCTCTCATCCCTTCTGATCTGTTTTGCGTTACTTGATCTATGATACTTGTGTTGCTTGATCTATAATGATTCTTTTATTACTCACACCAATCGGTACGTTCATCTTCATCTTTGATTCAAAGGCGAAGATCGATCGGTTCTAATTAATCTGTTTTTTTCTTCTTCTGAATTTCGAGATTCCGTTCCCGATCTGATGCAATTCTATGCTTTTTTGTGTGTTCAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAAGATTACGTGAATTTTTAGGTTTTTAGTGGGTGAAAAAATGGGGGGAGGTTGTGTTGTATCATCCCCTTGCCTTGATATTAATTGTGATAATTTTAGGTTTGGAATATGCGTTGTGGTTTGAGCATCTGTTACTGTTATGGTTGGGTTTTTGACATCTGATAATGAATCTGTGTACTGGAAGGATTACTGGGTCTTGGTCATCCAGATTGAAATACCTGAAAATCCTTGCTACTTATACATCTCAATCTGCTTTGCAGCTTGGTTAGAAGACGATAAGTCCCAAACAAGTGTTCAATGTTCTTTCTTACCAA

Coding sequences of Glyma06g01471

Limit To All Plant Sequences

>Glyma06g01471.1   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA

>Glyma06g01471.2   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA

>Glyma06g01471.3   sequence type=CDS   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTCTATGCTTTTTTGTGTGTTCAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA

Predicted protein sequences of Glyma06g01471

Limit To All Plant Sequences

>Glyma06g01471.1   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*

>Glyma06g01471.2   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*

>Glyma06g01471.3   sequence type=predicted peptide   gene model=Glyma06g01471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFYAFLCVQVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGYGGGGGGYGGGGGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN*

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