Glyma06g01430 - SoyBase

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Report for Sequence Feature Glyma06g01430

Feature Type:	gene_model
Chromosome:	Gm06
Start:	888838
stop:	891458
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34530	AT	Annotation by Michelle Graham. TAIR10: cryptochrome-interacting basic-helix-loop-helix 1 \| chr4:16498466-16499946 FORWARD LENGTH=335	SoyBase	E_val: 8.00E-61	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7J737	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor BEE n=1 Tax=Medicago truncatula RepID=G7J737_MEDTR	SoyBase	E_val: 4.00E-141	ISS
UniRef100_I1K769	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K769_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01430

Paralog	Evidence	Comments
Glyma04g01400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g012200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01430

Limit To All Plant Sequences

>Glyma06g01430.2   sequence type=transcript   gene model=Glyma06g01430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCATTTTTTATTCTTGTCATTACATATTAATTTTCCTTTTTTTTTTAATATTTCACCACTTTATATATACCCCGTCCCTTTTCCACTTGAGGCTTAACAACATTTCACTCCCACTACTCCTAAATCCTAATTCTCCTTCATTTCCTAAAAGCTTCGTGTGTTGGGCATGACGGTGTATTGGTCCTACTTTCCTTTTCTCTAAAGTATTCCTCTGTTTGAACACGAAGCTATAAGCCTACAACTATAATTGTTGCTAGTTATTCACTGATAATTACTATAATTAACGTAAAACATGTTGCACTGCGCCAACACGTCGGGGAATCTGGCTGTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGCAACAGCTTCAACGGTGTTTTTTCTTCTTCTTCTCTGCACGTTCATGATTCCATTATGGTGGCTGCTGACTCCGGTTGTGCACTCGCTGAGGTCGTGGCTCAGGCCCAGGCTCGCTCAACCAATTCTTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCGAGTCCGAGTCCAAGCCCAAGCCCAAGCCCACCGACTCCTCTGTTGGGAAAGACGGTTTCAAGAAGAGGAAACCTGACAAGCCTCACCATCCGAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAATTCGGCTCTGATGATGGAGAATCCAAAATCACCAAGAGTAACACAACAAACACAAATACCAACAACAACAAAGAAACTTGCGCAGAGACTTCAAATTCCAAGGCCTCCGAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATTGATGATCTATTTGACAAAGATGTTTTTTCTACTTGTGCTACAAATTTTCCAAACATAGGAATTTCATCAACATCAGACATTTCTAACCCTGCCTATCTTCAGTTTAATTCCCCACAACAAATTTTTTCATATGATGGATTAGACCCATCCGATATGGGGCTCAGAAGGACCATAAGTGCTCCTGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTTGATTTTGATCAAGCACGGGCTACATCTTTCCCTTCTCAGCTGTTATCAGGTCTGGTTGAAGCTGGCAATCTAAAGATGGAGATGTAGACTAGAGCTTCTATTTCCTTCTGCAACTTATCAAGATTCTTTTTGTTTTGTTTTCAAGTACATAGCATATATAAATTGTTTGTAACTGCTCCATAATATAAATAAAATTTATTAATACCAGTTAACTTCAGTCACCTTCTTTT

Coding sequences of Glyma06g01430

Limit To All Plant Sequences

>Glyma06g01430.1   sequence type=CDS   gene model=Glyma06g01430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCACTGCGCCAACACGTCGGGGAATCTGGCTGTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGCAACAGCTTCAACGGTGTTTTTTCTTCTTCTTCTCTGCACGTTCATGATTCCATTATGGTGGCTGCTGACTCCGGTTGTGCACTCGCTGAGGTCGTGGCTCAGGCCCAGGCTCGCTCAACCAATTCTTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCGAGTCCGAGTCCAAGCCCAAGCCCAAGCCCACCGACTCCTCTGTTGGGAAAGACGGTTTCAAGAAGAGGAAACCTGACAAGCCTCACCATCCGAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAATTCGGCTCTGATGATGGAGAATCCAAAATCACCAAGAGTAACACAACAAACACAAATACCAACAACAACAAAGAAACTTGCGCAGAGACTTCAAATTCCAAGGCCTCCGAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATTGATGATCTATTTGACAAAGATGTTTTTTCTACTTGTGCTACAAATTTTCCAAACATAGGAATTTCATCAACATCAGACATTTCTAACCCTGCCTATCTTCAGTTTAATTCCCCACAACAAATTTTTTCATATGATGGATTAGACCCATCCGATATGGGGCTCAGAAGGACCATAAGTGCTCCTGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTTGATTTTGATCAAGCACGGGCTACATCTTTCCCTTCTCAGCTGTTATCAGGTAACTATAAATCTGTGCCGTGTCGGACCACTTTTTTCCTTAGCTTGCTATCTTAA

>Glyma06g01430.2   sequence type=CDS   gene model=Glyma06g01430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCACTGCGCCAACACGTCGGGGAATCTGGCTGTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGCAACAGCTTCAACGGTGTTTTTTCTTCTTCTTCTCTGCACGTTCATGATTCCATTATGGTGGCTGCTGACTCCGGTTGTGCACTCGCTGAGGTCGTGGCTCAGGCCCAGGCTCGCTCAACCAATTCTTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCGAGTCCGAGTCCAAGCCCAAGCCCAAGCCCACCGACTCCTCTGTTGGGAAAGACGGTTTCAAGAAGAGGAAACCTGACAAGCCTCACCATCCGAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAATTCGGCTCTGATGATGGAGAATCCAAAATCACCAAGAGTAACACAACAAACACAAATACCAACAACAACAAAGAAACTTGCGCAGAGACTTCAAATTCCAAGGCCTCCGAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATTGATGATCTATTTGACAAAGATGTTTTTTCTACTTGTGCTACAAATTTTCCAAACATAGGAATTTCATCAACATCAGACATTTCTAACCCTGCCTATCTTCAGTTTAATTCCCCACAACAAATTTTTTCATATGATGGATTAGACCCATCCGATATGGGGCTCAGAAGGACCATAAGTGCTCCTGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTTGATTTTGATCAAGCACGGGCTACATCTTTCCCTTCTCAGCTGTTATCAGGTCTGGTTGAAGCTGGCAATCTAAAGATGGAGATGTAG

Predicted protein sequences of Glyma06g01430

Limit To All Plant Sequences

>Glyma06g01430.1   sequence type=predicted peptide   gene model=Glyma06g01430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHCANTSGNLAVAGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVHDSIMVAADSGCALAEVVAQAQARSTNSSSISRTFSCPPALVEPESESKPKPKPTDSSVGKDGFKKRKPDKPHHPKVVAENDNKDKRIKFGSDDGESKITKSNTTNTNTNNNKETCAETSNSKASEKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFDKDVFSTCATNFPNIGISSTSDISNPAYLQFNSPQQIFSYDGLDPSDMGLRRTISAPVSMPETYLQSSCFTQMLPSSTWEGDFQNLCNFDFDQARATSFPSQLLSGNYKSVPCRTTFFLSLLS*

>Glyma06g01430.2   sequence type=predicted peptide   gene model=Glyma06g01430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHCANTSGNLAVAGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVHDSIMVAADSGCALAEVVAQAQARSTNSSSISRTFSCPPALVEPESESKPKPKPTDSSVGKDGFKKRKPDKPHHPKVVAENDNKDKRIKFGSDDGESKITKSNTTNTNTNNNKETCAETSNSKASEKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFDKDVFSTCATNFPNIGISSTSDISNPAYLQFNSPQQIFSYDGLDPSDMGLRRTISAPVSMPETYLQSSCFTQMLPSSTWEGDFQNLCNFDFDQARATSFPSQLLSGLVEAGNLKMEM*

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