SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39230 | AT | Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein | chr4:18266024-18267604 REVERSE LENGTH=308 | SoyBase | E_val: 6.00E-141 | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0032442 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phenylcoumaran benzylic ether reductase activity | SoyBase | N/A | ISS |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF62 | Panther | EPIMERASE-RELATED | JGI | ISS | |
| PF05368 | PFAM | NmrA-like family | JGI | ISS | |
| UniRef100_Q9SDZ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase homolog 2 n=1 Tax=Glycine max RepID=Q9SDZ0_SOYBN | SoyBase | E_val: 1.00E-169 | ISS |
| UniRef100_UPI00023395ED | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023395ED related cluster n=1 Tax=unknown RepID=UPI00023395ED | SoyBase | E_val: 4.00E-179 | ISS |
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Glyma06g01421 not represented in the dataset |
Glyma06g01421 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g012100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g01421.1 sequence type=CDS gene model=Glyma06g01421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGGGACAGCAAGAGCAAGATTCTGTTCATCGGAGGAACTGGTTACATCGGAAAATTCATCGTGGAAGCCAGCGCCAAAGCTGGCCACCCAACTTTCGTTTTGGTGAGGGAGTCCTCTCTCTCCAACCCCGCAAAATCATCCCTCATCCTCGGTGTCAATTTTGTTTTCAAGTTCTATCCATCTGAGTTTGGAAATGATGTGGACCGGACTCATGCAGTGGAACCAGCCAAATCTGCATTTGCAACAAAGGCCAATGTTCGCAGAGCTATTGAGGCTCAAGAAATTCCCTTCACTTATGTGTCAAGCAACTTCTTTGCTGGTTACTTCCTACCCAACTTGTCGCAGCCTGGAGCTACAGCTGCCCCCAGAGACAGAGTTATTATCCTAGGAGATGGAAATCCCAAAGCTGTTTTTAACAAGGAAGAGGATATTGGAACTTATACAATCAATTCTGTGGATGATCCAAGAACCTTGAACAAAATTCTCTACATTAGACCACCAGCTAATACCTTGTCATTTAACGAGCTTGTTACTCTCTGGGAGGGAAAGATTGGTAAAACACTTGAAAGAATTTATGTTCCAGAGGAACAACTCCTGAAGCAAATTGAAGAGTCCGCACCACCCGTGAATGTGATCCTGTCAATTAATCACTCTTCTTATGTAAAGGGGGATCAGACTAACTTTGAAATTGAGTCTTCATTTGGAGTGGAGGCTTCAGCTCTATATCCTGATGTGAAATACACCACTGTGGATGAGTACCTTAATCAGTTCGTCTAA
>Glyma06g01421.1 sequence type=predicted peptide gene model=Glyma06g01421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGDSKSKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESSLSNPAKSSLILGVNFVFKFYPSEFGNDVDRTHAVEPAKSAFATKANVRRAIEAQEIPFTYVSSNFFAGYFLPNLSQPGATAAPRDRVIILGDGNPKAVFNKEEDIGTYTINSVDDPRTLNKILYIRPPANTLSFNELVTLWEGKIGKTLERIYVPEEQLLKQIEESAPPVNVILSINHSSYVKGDQTNFEIESSFGVEASALYPDVKYTTVDEYLNQFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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