Glyma06g01391 - SoyBase

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Report for Sequence Feature Glyma06g01391

Feature Type:	gene_model
Chromosome:	Gm06
Start:	866877
stop:	869760
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01391

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48530	AT	Annotation by Michelle Graham. TAIR10: SNF1-related protein kinase regulatory subunit gamma 1 \| chr3:17987559-17989592 FORWARD LENGTH=424	SoyBase	E_val: 6.00E-32	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1764	KOG	5'-AMP-activated protein kinase, gamma subunit	JGI		ISS
PTHR13780	Panther	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	JGI		ISS
PTHR13780:SF13	Panther	AMP-ACTIVATED PROTEIN KINASE-RELATED	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
UniRef100_B9RH65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RH65_RICCO	SoyBase	E_val: 1.00E-144	ISS
UniRef100_UPI000233A69C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A69C related cluster n=1 Tax=unknown RepID=UPI000233A69C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01391

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01391 not represented in the dataset	Glyma06g01391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01391

Paralog	Evidence	Comments
Glyma04g01355	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01391 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g011800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01391

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01391

Limit To All Plant Sequences

>Glyma06g01391.1   sequence type=CDS   gene model=Glyma06g01391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTCGGAAAATTGCGGACGTGTTGAACGTCTCGGATGGTGGTCGTGGGTTAGAAAACAAGGAAAAGAACCTCAGTTCAAACCTCCACAATGATCATGATAACCAAAACCAACACGTGCAGATTGATTCTGGCTCTGCCCTCCAACAATTTCTTGATCACATACCCATTAGTGCAATAGCTGGCATAAAAAATTCACCTGTTTTGGAATTGAAAGCTGGAGACAGTATAAGGGATGCAATTCATGCGTTGTACAAAAAGGATATATTTTCTGCAGCAATTGTGGATACGTCAGACTCCCATGCGGGCAGCATAAGGTTTTCAGATCGTTATATTGGTCTCATTGATTTTACAAGCATGGTTCTTTGGTGCCTTGAGGAATTTGATAAGATAAAAAATGATACCATGGAAAATCATCTCATGGATTTAGAGAACGATGGCCTTTTCTCCATCCTGGATCAGGTTCCTCAGATTGGGCTAACCAAGGTTAGCGAGTTGGCCAAGTCATTCCTCTGGGAACCATTTTTCCCAGTAAACATGGATGACACGGTTTTGCATGCTTTGCTACTTCTCTCTAAGCATCGGGTGCACGTTTTGCCGGTCATACAGGAACCTCAAGCTGGACTCATCGGTTATGTTACACAGAATGCAGTAGTCCAGCACCTTCTTCAATCAAGTGAACTAGAGTGGTTTGATAGCATTGCAGATAAGAACATATCAGATTTCCGATTTGAAAGCCAAGAAAATCCTAGTTGTGTATATGGGGACCAAACTGTTGCAAATGCTTTAGATTTGCTCTGGCAAAACCAAACTTGTGCAGTTGCTGTTGTAGATCGACAAACTAAGAAGCTCGTGGGTAATGTAAGGAACGGCGACGTTTATAATCTTGTAAAGAATAATGACCTCCTAAGAAATAGATCGATTTTAACTGTGAAAGAATTCATTCACATAGAGACTGACAAAGTAGTAACTGAACAAGCCATTGAACATGACCATGGGGCTTTACTCACAGCAGGAAGTCTCCGTCTGAAAAACAGCTTCATACCCAGAATGGACTTGCCCGTTGCCAACAAGGAAACTGAAACGCTCAAGCAAATAATGGAGCATACGACTGAGACTAATAGCAGTTTCAGCTTTCTGATCAATGATAATGAGCAAGTTACAGGGTTGCTCACACTAAGAGATATAATTCTGCAGTTTGCACCACCAAATATGAATTCTAGCATTAATGGAGGTGGGTTTTTCGAATTTGCCTTGGAGCAAAGTGGATGTCAGGTGAAAAATGGAACTATGGTTCGTAATCATTGA

Predicted protein sequences of Glyma06g01391

Limit To All Plant Sequences

>Glyma06g01391.1   sequence type=predicted peptide   gene model=Glyma06g01391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRKIADVLNVSDGGRGLENKEKNLSSNLHNDHDNQNQHVQIDSGSALQQFLDHIPISAIAGIKNSPVLELKAGDSIRDAIHALYKKDIFSAAIVDTSDSHAGSIRFSDRYIGLIDFTSMVLWCLEEFDKIKNDTMENHLMDLENDGLFSILDQVPQIGLTKVSELAKSFLWEPFFPVNMDDTVLHALLLLSKHRVHVLPVIQEPQAGLIGYVTQNAVVQHLLQSSELEWFDSIADKNISDFRFESQENPSCVYGDQTVANALDLLWQNQTCAVAVVDRQTKKLVGNVRNGDVYNLVKNNDLLRNRSILTVKEFIHIETDKVVTEQAIEHDHGALLTAGSLRLKNSFIPRMDLPVANKETETLKQIMEHTTETNSSFSFLINDNEQVTGLLTLRDIILQFAPPNMNSSINGGGFFEFALEQSGCQVKNGTMVRNH*

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