Glyma06g01380 - SoyBase

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Report for Sequence Feature Glyma06g01380

Feature Type:	gene_model
Chromosome:	Gm06
Start:	862075
stop:	866585
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39210	AT	Annotation by Michelle Graham. TAIR10: Glucose-1-phosphate adenylyltransferase family protein \| chr4:18260332-18263181 FORWARD LENGTH=521	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG1322	KOG	GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase	JGI		ISS
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI		ISS
PTHR22572:SF10	Panther	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	JGI		ISS
PF00483	PFAM	Nucleotidyl transferase	JGI		ISS
UniRef100_I1K764	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=I1K764_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K764	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=I1K764_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01380

Paralog	Evidence	Comments
Glyma04g01350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g011700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01380

Limit To All Plant Sequences

>Glyma06g01380.1   sequence type=CDS   gene model=Glyma06g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTTGTGTGACCCTGAAAGCCAATACCCATTTAGCAAACTCTGAGAAAGGCTTTCTTGGAGAAAGAATAAAAGGTGGCTTCAACAACAGTGCCTTGGTGATGAATCAGTTGGCTATACGTTCTAGAAGCCACAAGAGGGTGAAACATGGTGTTGGTGTTGTATCTTCTGTTCTCACATCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCCTTTCTGAGAAGAAGAGCTGATCCAAAAAATGTTGTTTCCATCATATTGGGAGGCGGACCTGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCTGCCGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGTCTCAACAGTGGCATCAACAAAATATTTGTGCTGACCCAGTTCAACTCTGCATCCCTCAACCGCCACATCGCCCGCACCTATTTTGGAAATGGCATTAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTGTTGATCTTGGCTGGAGATCATCTATATCGAATGGATTACATGGACCTTGTGCAGAGTCACGTGGATAGAAATGCTGATATTACAGTTTCATGTGCTGCCGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACAGAGGCCGCATCATTCAATTTTCAGAAAAACCTAAGGGTGATGATCTGAAAGCAATGCAAGCAGATACCTCTCTTCTTGGGTTGTCATCCCAAGATGCATTAGAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCAAATGACTTCGGATCTGAAATCATCCCTGCAGCTGTGAGGGATCACAATGTCCAATCATATTTTTTTGGAGACTATTGGGAAGACATTGGAACAATAAAATCCTTTTACAATGCTAACTTGGCTCTTACTGAAGAGAGTCACAAGTTCGAATTTTATGACCCCAAGATTCCCATTTACACATCTCCAGGATTCTTACCACCAACAAAGATTGACAAATGCCGGATTGTGGATGCTATTATCTCCCATGGATGTTTCCTGCGGGAATGCACAGTTCAACACTCCATTGTGGGTGAACGTTCACGCTTGGATTATGGCGTTGAGGTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATTGGAAGGAATACCAAAATTAGGAACTGTATTATTGACAAGAATGCAAAGATCGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTCTACATCCGATCAGGAATCACCATCATAATGGAGAAGGCAACCATAGAAGATGGCACTGTCATATAA

Predicted protein sequences of Glyma06g01380

Limit To All Plant Sequences

>Glyma06g01380.1   sequence type=predicted peptide   gene model=Glyma06g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACVTLKANTHLANSEKGFLGERIKGGFNNSALVMNQLAIRSRSHKRVKHGVGVVSSVLTSNNAKESLTLQVPSFLRRRADPKNVVSIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPKGDDLKAMQADTSLLGLSSQDALESPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHNVQSYFFGDYWEDIGTIKSFYNANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVEVLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTVI*

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