Glyma06g01310 - SoyBase

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Report for Sequence Feature Glyma06g01310

Feature Type:	gene_model
Chromosome:	Gm06
Start:	833907
stop:	835985
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39200	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S25 family protein \| chr4:18257464-18258464 FORWARD LENGTH=108	SoyBase	E_val: 1.00E-53	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1767	KOG	40S ribosomal protein S25	JGI		ISS
PTHR12850	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12850:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03297	PFAM	S25 ribosomal protein	JGI		ISS
UniRef100_C6SW17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW17_SOYBN	SoyBase	E_val: 3.00E-71	ISS
UniRef100_Q6VEV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S25 (Fragment) n=1 Tax=Glycine max RepID=Q6VEV1_SOYBN	SoyBase	E_val: 6.00E-59	ISS

Expression Patterns of Glyma06g01310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01310

Paralog	Evidence	Comments
Glyma04g01270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g011000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01310

Limit To All Plant Sequences

>Glyma06g01310.2   sequence type=transcript   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAGATTAGGCCAAAAAAACATATTATTTGCACAGCTATGTGAAACCTAAACTGGGCCTTTATCTAACAAAAAAGCCCATTGGGCAATAAAGCCCTTTCTACTAAAATGAGATCCAGACTATAGATATGTTAAACGACGTAGTTTTAAGCGAATCGTTTGGCCTTTTTATTCCTCCTACTCTCAAATACCCTAATTAGGTTTGTGATTGTCTTTGCCTCACTTTGCTGCCGTACCTAATCGGAGAGCTCCCGCTGACTGCGATCGGATTTCATGGCTCCTAAGAAAGACAAGGCTCCCCCACCTTCATCCAAGCCCGCCAAGTCTGGTGGTGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACCAGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTCTCCGAGGCACCCAAATACAAACTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGGTATCTTCTATCATCACTTTTTTTTATTATTATTCTTATGTTAAAGGATTATTCTTATTGATGGGAGCGTTTGTGTTGGTGATGTTTTGATTCATTTCATTTATTTTGTTGTTCTTAAAATTAAATTGTGAATTATAAGAGCTTTAATGTGGGTGAGGTCTCAGTTATAGCTATTCCTTAATTGGTAGTCGTCTATAAGATCTGCATTCCTAGACTGATTGATTGTATGGAGCATATGTTTGGTATTGTTATGTTCTTAATTGGGATTATCTAGACTGATTGGTTGGGTTCCAACTTCAATTGTTGCATATTTGAAACTTTGTATATTCTGTGTCATTTGAGATTCCGAATTGTATTACAAGCCATAAACCTAGGATTTATTGTTAGTTGCACTTATTTATGTGTCTATGCTTTGTCCTTTTGCTGCCTTTTGGGAAATAATTCTGGAAAATTGTTTTATGTTCTAACCATATGACAGTCTTCTTGGCACATGGCTATGCTCACATTTTTTTGTAATGGTTTCTTTGATATCATTCTAGAGTCTAGATTTACTAACTATTGTTTTTCCCTGCTATAGTAATTGCCCAGTAGTAAGTAGTGAAATATGACGGTACCTTTTCATAGGTAATACTTGTGTAATCTATTACCACATTATTTAGTTAGGATGGACACAAGCCTTGTGTACTGTGTTAACTCATTTGAAATTTGCAATGTATAAATGGGGAAGTGGTTGAAAATTAATTCTCTTTTGGCCATTTTCAGCACCATGACATTGTTCTACACTCAAAACACAATTGTTCTGCATGACTGTTATCTTTTCAATTAGTTTTTATGGATTATATTAAGATTCTCATAATTTTTCATGCACTTTACAGATTAATGGATCACTTGCAAGGAAGGCTATTAGGGAATTGATGGCCAGAGGTTCAATAAGGATGGTGTCTGCCCATGCTAGTCAGCAGATTTACACTAGAGCGACAAACACCTAGATGTACTGGTTATAATTTATGTAGTATTGATGCACCGCTGAAGTGAAATTTTGTTTTTTTCTGTTTGAGACATACCTCATGCTAGATTGCATCAGTTTGACGGTTGCTAAATTCATGGGTTATTTCCTTTTGCATCCTTGGTAATATATTTGACACAAGGCTTTCATATTTGTTGTTTTTGGCGTTATGCAAGCATGTTATTCCGTTAGGTGAAGCTAGCCTTCACAGATAGATTTGGATATTTTAACTGCATGTCTGGTAACCTATAATCCGTTTGAAACGTGATGTTCCGCTACAACACTGAAGATGCTCAGTATAGCTTGACGTGAAAATGTGTGTATACGGGAGTTGCAAGCACAACTCCAAACACTAATGAGAAGAGAGATCACGGCAATAA

>Glyma06g01310.3   sequence type=transcript   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAGATTAGGCCAAAAAAACATATTATTTGCACAGCTATGTGAAACCTAAACTGGGCCTTTATCTAACAAAAAAGCCCATTGGGCAATAAAGCCCTTTCTACTAAAATGAGATCCAGACTATAGATATGTTAAACGACGTAGTTTTAAGCGAATCGTTTGGCCTTTTTATTCCTCCTACTCTCAAATACCCTAATTAGGTTTGTGATTGTCTTTGCCTCACTTTGCTGCCGTACCTAATCGGAGAGCTCCCGCTGACTGCGATCGGATTTCATGGCTCCTAAGAAAGACAAGGCTCCCCCACCTTCATCCAAGCCCGCCAAGTCTGGTGGTGGGAAGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACCAGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTCTCCGAGGCACCCAAATACAAACTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATTAGGGAATTGATGGCCAGAGGTTCAATAAGGATGGTGTCTGCCCATGCTAGTCAGCAGATTTACACTAGAGCGACAAACACCTAGATGTACTGGTTATAATTTATGTAGTATTGATGCACCGCTGAAGTGAAATTTTGTTTTTTTCTGTTTGAGACATACCTCATGCTAGATTGCATCAGTTTGACGGTTGCTAAATTCATGGGTTATTTCCTTTTGCATCCTTGGTAATATATTTGACACAAGGCTTTCATATTTGTTGTTTTTGGCGTTATGCAAGCATGTTATTCCGTTAGGTGAAGCTAGCCTTCACAGATAGATTTGGATATTTTAACTGCATGTCTGGTAACCTATAATCCGTTTGAAACGTGATGTTCCGCTACAACACTGAAGATGCTCAGTATAGCTTGACGTGAAAATGTGTGTATACGGGAGTTGCAAGCACAACTCCAAACACTAATGAGAAGAGAGATCACGGCAATAA

Coding sequences of Glyma06g01310

Limit To All Plant Sequences

>Glyma06g01310.1   sequence type=CDS   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTAAGAAAGACAAGGCTCCCCCACCTTCATCCAAGCCCGCCAAGTCTGGTGGTGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACCAGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTCTCCGAGGCACCCAAATACAAACTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATTAGGGAATTGATGGCCAGAGGTTCAATAAGGATGGTGTCTGCCCATGCTAGTCAGCAGATTTACACTAGAGCGACAAACACCTAG

>Glyma06g01310.2   sequence type=CDS   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTAAGAAAGACAAGGCTCCCCCACCTTCATCCAAGCCCGCCAAGTCTGGTGGTGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACCAGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTCTCCGAGGCACCCAAATACAAACTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGGTATCTTCTATCATCACTTTTTTTTATTATTATTCTTATGTTAAAGGATTATTCTTATTGATGGGAGCGTTTGTGTTGGTGATGTTTTGA

>Glyma06g01310.3   sequence type=CDS   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTAAGAAAGACAAGGCTCCCCCACCTTCATCCAAGCCCGCCAAGTCTGGTGGTGGGAAGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACCAGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTCTCCGAGGCACCCAAATACAAACTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATTAGGGAATTGATGGCCAGAGGTTCAATAAGGATGGTGTCTGCCCATGCTAGTCAGCAGATTTACACTAGAGCGACAAACACCTAG

Predicted protein sequences of Glyma06g01310

Limit To All Plant Sequences

>Glyma06g01310.1   sequence type=predicted peptide   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT*

>Glyma06g01310.2   sequence type=predicted peptide   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRVSSIITFFYYYSYVKGLFLLMGAFVLVMF*

>Glyma06g01310.3   sequence type=predicted peptide   gene model=Glyma06g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKDKAPPPSSKPAKSGGGKQKKKWSKGKQKEKVNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT*

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