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Report for Sequence Feature Glyma06g01200

Feature Type:gene_model
Chromosome:Gm06
Start:750518
stop:753400
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g01200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43010AT Annotation by Michelle Graham. TAIR10: regulatory particle triple-A ATPase 4A | chr5:17248563-17251014 REVERSE LENGTH=399 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008540GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI ISS
PTHR23073Panther 26S PROTEASE REGULATORY SUBUNIT JGI ISS
PTHR23073:SF10Panther 26S PROTEASE REGULATORY SUBUNIT S10B JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_I1K743UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K743_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8H9D4UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome AAA-ATPase subunit RPT4a n=1 Tax=Solanum tuberosum RepID=Q8H9D4_SOLTU SoyBaseE_val: 1.00E-180ISS

Expression Patterns of Glyma06g01200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g01200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g009700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g01200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g01200
>Glyma06g01200.1   sequence type=CDS   gene model=Glyma06g01200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAAATTTTACGACGTCTTTCTGCGGTGGCCGAGTATCGAAGAAAGTTTTACCTTTGTCAAATAATCCATTACAGAATCCGAGCAGCCAAAAGGGTTTTGCGGGATGCAAAGAAGGAATATGCGACAACTCAGTCCCTGAGGAGGGGTGGCCAACTCGTTACTCTTGTTGAAGGGCCTTATAATGATCACAATCAACGCTTTATAGTAAAATCAAGCAGTGGAGCAGATAGACATATAGTTGGCATTCATAGTAAGGTGGAGAAGGAGAAGCTAGTTCCAGGCACAAGAGTTAGCCTGGATAGGACTACCATGACCATTATGAGAATTCTTCCGCCCCAAGTTGACCCTTTTGTGTATAACATGATTCATGAAGACCCTATAAATGCTAATTACTCTGCACTTAGAGAGCTTACAGAACAGATTCGAGAACACGGGGAATCGATTGAACTGCCTCCTGAGCTTAATCTCAAGGTTATGTGGGACACGGGACATGTTAAGTACGCTGCAGTTGGAGGGCTTTCAGATCAGATTCGACAACTCAGGGAATCGATTGAGCTGCCTTTAACGAATCCTGAGCTTTTTCTCAGGGTTGGAATTGGAATGAAACTCCCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGCAAGACATTATTAGCAAAAGCAATTTCCTGCAACGTAGATGCTAAATTCTTGAAGGTTGTATCTAGTACTATAATTCATAAATCTATTGGTGAAAGTGCAAGATTAATTAGGGAAATGTTTAAATATGCCCGCAATCATCAGCCTTGCATCATATTCATGGATGAGATTGATGCCATTGCTGGACGACGTTCCAGTAACCGCAAAGGTTCTGATCGTGAAATTCAAAGAACCCTCAAGGAGCTGCTTAACCAGCTGGATGGATTAAATCATCTTGAAAAGGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATAGGAAGTCAAGGATGGAAATCTTCAAAATCCATGCAGAAGGAGTTACAAAACGTGGTGAAATTGACTATGAAGCAGTTGTGAAGCTTGCTGAGGGGTTCAATGGTGCTGATCTTCGTAATGTTTGTACTGAAGCTGGTCTGTTTGCTATTCGTGCAGAACGTGATTATGTTATTCATGGAGATTTCATCAAGGGTGTGCGCAAACTGAATGAAGCAAAGAAACTGGAATCAAGCCCCTGA
Predicted protein sequences of Glyma06g01200
>Glyma06g01200.1   sequence type=predicted peptide   gene model=Glyma06g01200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEILRRLSAVAEYRRKFYLCQIIHYRIRAAKRVLRDAKKEYATTQSLRRGGQLVTLVEGPYNDHNQRFIVKSSSGADRHIVGIHSKVEKEKLVPGTRVSLDRTTMTIMRILPPQVDPFVYNMIHEDPINANYSALRELTEQIREHGESIELPPELNLKVMWDTGHVKYAAVGGLSDQIRQLRESIELPLTNPELFLRVGIGMKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYARNHQPCIIFMDEIDAIAGRRSSNRKGSDREIQRTLKELLNQLDGLNHLEKVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYEAVVKLAEGFNGADLRNVCTEAGLFAIRAERDYVIHGDFIKGVRKLNEAKKLESSP*






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