Glyma06g01180 - SoyBase

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Report for Sequence Feature Glyma06g01180

Feature Type:	gene_model
Chromosome:	Gm06
Start:	732594
stop:	736879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39100	AT	Annotation by Michelle Graham. TAIR10: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein \| chr4:18218298-18220134 REVERSE LENGTH=228	SoyBase	E_val: 9.00E-118	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12505	Panther	PHD FINGER TRANSCRIPTION FACTOR	JGI		ISS
PTHR12505:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
PF01426	PFAM	BAH domain	JGI		ISS
UniRef100_B9RHA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phd finger transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHA1_RICCO	SoyBase	E_val: 4.00E-148	ISS
UniRef100_I1K738	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K738_SOYBN	SoyBase	E_val: 1.00E-160	ISS

Expression Patterns of Glyma06g01180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g01180 not represented in the dataset	Glyma06g01180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01180

Paralog	Evidence	Comments
Glyma04g01140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g009400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01180

Limit To All Plant Sequences

>Glyma06g01180.2   sequence type=transcript   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGTAGGTCAATGAACGTTGATAACAACGTCGGCCCACCATTTTTCCCTGTTCAGCGATGCACTCAAACAAAAAAGTGTGTTACACAGTTTTTACAAATAAAAAATAAAAAAGGCTTAATATTTTTTCTGTATTTTTTTTCATCCTCAATCTTCTCCATCGCGTGTGCTTCAATTCCATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGGTAAACACACTCACTCGCTTTCTCGGCAAAAAAAAAAAAAGTTGAATTCTGTTTTGTGCTCTCTCTGTTTGCTTGTCCTTAATCGAAACGCGCGCGCTTTTGTTGTTGTCTCTCAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCATAAAATGAGTTAGATCTATAATGGATGTACTGAAGATCTTGCTTTTCTAATCCTGGGTAGGGGCCAGACAAACACAGAGACAAAGTTATCTAGTAGTAAGCTGTAGTCTTTCTACTTTCATGGAAAGAGACTAGTTTGGAAATGTTTGTCATGTCTATTTGGTTTGAGTACTCATCCTGTTTCCTTTGGAAGTGGAGGACGTGTTTATGTAATTATTTAGTGTAGATTCTGTGTCACTTCTCTCTGGTCCTTGTTCTCGGGCGTTTTGTAAAGTATTTTGACTTATTTATAAGCAGTAGACACTTTATTCTTTCTTTTTACTGATAGAGGTAGGCAATGATCTAGAGTTTCTATACACCGATAATGGCGCCGTGTTGTTGGCGTGAAAAGAATTGAGGATAAAAAAATATACGATATTGGGTTGTAATTTAATTCAGCCTTTCGTTGGCAAAGACCTCTGAAAGAACTTGCTAGAGACATTGCATGCCGATAGTTTCTCACCTCTGTATCATCTGGCGTGATGACGATGGAGATTGGAAAATACGTTATTTTTTTGGACCATAGAAAAACAAATCTATATTGGAGTACTGCCTATGGTTTGAACCAATCAAAGACGCAATACACTCCACTAACGGTGCTTGTGAATGGACTAGAGTGGAATGTCGCGGAGTGAAATAGAACAGAACGACATTGAATGTAGTAAAAATATTGTTCGAATATTTTATGATGGGGTAGAATAAAAACATCATGTTATTGCGAATAAAAATTAGATGTAGTTCTATTGTTTTTC

>Glyma06g01180.3   sequence type=transcript   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGTAGGTCAATGAACGTTGATAACAACGTCGGCCCACCATTTTTCCCTGTTCAGCGATGCACTCAAACAAAAAAGTGTGTTACACAGTTTTTACAAATAAAAAATAAAAAAGGCTTAATATTTTTTCTGTATTTTTTTTCATCCTCAATCTTCTCCATCGCGTGTGCTTCAATTCCATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCATAAAATGAGTTAGATCTATAATGGATGTACTGAAGATCTTGCTTTTCTAATCCTGGGTAGGGGCCAGACAAACACAGAGACAAAGTTATCTAGTAGTAAGCTGTAGTCTTTCTACTTTCATGGAAAGAGACTAGTTTGGAAATGTTTGTCATGTCTATTTGGTTTGAGTACTCATCCTGTTTCCTTTGGAAGTGGAGGACGTGTTTATGTAATTATTTAGTGTAGATTCTGTGTCACTTCTCTCTGGTCCTTGTTCTCGGGCGTTTTGTAAAGTATTTTGACTTATTTATAAGCAGTAGACACTTTATTCTTTCTTTTTACTGATAGAGGTAGGCAATGATCTAGAGTTTCTATACACCGATAATGGCGCCGTGTTGTTGGCGTGAAAAGAATTGAGGATAAAAAAATATACGATATTGGGTTGTAATTTAATTCAGCCTTTCGTTGGCAAAGACCTCTGAAAGAACTTGCTAGAGACATTGCATGCCGATAGTTTCTCACCTCTGTATCATCTGGCGTGATGACGATGGAGATTGGAAAATACGTTATTTTTTTGGACCATAGAAAAACAAATCTATATTGGAGTACTGCCTATGGTTTGAACCAATCAAAGACGCAATACACTCCACTAACGGTGCTTGTGAATGGACTAGAGTGGAATGTCGCGGAGTGAAATAGAACAGAACGACATTGAATGTAGTAAAAATATTGTTCGAATATTTTATGATGGGGTAGAATAAAAACATCATGTTATTGCGAATAAAAATTAGATGTAGTTCTATTGTTTTTC

>Glyma06g01180.4   sequence type=transcript   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGTAGGTCAATGAACGTTGATAACAACGTCGGCCCACCATTTTTCCCTGTTCAGCGATGCACTCAAACAAAAAAGTGTGTTACACAGTTTTTACAAATAAAAAATAAAAAAGGCTTAATATTTTTTCTGTATTTTTTTTCATCCTCAATCTTCTCCATCGCGTGTGCTTCAATTCCATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGAATTTAATACCATTTGAATTGACTCGCTGAGGCTTTGGAGAAGTTGATATCTTCATCTATTATCTATTGGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCATAAAATGAGTTAGATCTATAATGGATGTACTGAAGATCTTGCTTTTCTAATCCTGGGTAGGGGCCAGACAAACACAGAGACAAAGTTATCTAGTAGTAAGCTGTAGTCTTTCTACTTTCATGGAAAGAGACTAGTTTGGAAATGTTTGTCATGTCTATTTGGTTTGAGTACTCATCCTGTTTCCTTTGGAAGTGGAGGACGTGTTTATGTAATTATTTAGTGTAGATTCTGTGTCACTTCTCTCTGGTCCTTGTTCTCGGGCGTTTTGTAAAGTATTTTGACTTATTTATAAGCAGTAGACACTTTATTCTTTCTTTTTACTGATAGAGGTAGGCAATGATCTAGAGTTTCTATACACCGATAATGGCGCCGTGTTGTTGGCGTGAAAAGAATTGAGGATAAAAAAATATACGATATTGGGTTGTAATTTAATTCAGCCTTTCGTTGGCAAAGACCTCTGAAAGAACTTGCTAGAGACATTGCATGCCGATAGTTTCTCACCTCTGTATCATCTGGCGTGATGACGATGGAGATTGGAAAATACGTTATTTTTTTGGACCATAGAAAAACAAATCTATATTGGAGTACTGCCTATGGTTTGAACCAATCAAAGACGCAATACACTCCACTAACGGTGCTTGTGAATGGACTAGAGTGGAATGTCGCGGAGTGAAATAGAACAGAACGACATTGAATGTAGTAAAAATATTGTTCGAATATTTTATGATGGGGTAGAATAAAAACATCATGTTATTGCGAATAAAAATTAGATGTAGTTCTATTGTTTTTCAGTTAGAATTTAAGTTTGATCTCGGTACTTTATGTTAGCC

Coding sequences of Glyma06g01180

Limit To All Plant Sequences

>Glyma06g01180.1   sequence type=CDS   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA

>Glyma06g01180.2   sequence type=CDS   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA

>Glyma06g01180.3   sequence type=CDS   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTATTGTAA

>Glyma06g01180.4   sequence type=CDS   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCAAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGAATTTAATACCATTTGA

Predicted protein sequences of Glyma06g01180

Limit To All Plant Sequences

>Glyma06g01180.1   sequence type=predicted peptide   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPKAPRRTLESYSVKHISKTIRAGDCILMRPSDPSKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR*

>Glyma06g01180.2   sequence type=predicted peptide   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPSDPSKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR*

>Glyma06g01180.3   sequence type=predicted peptide   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPKAPRRTLESYSVKHISKTIRAGDCILMRPSDPSKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVL*

>Glyma06g01180.4   sequence type=predicted peptide   gene model=Glyma06g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPKAPRRTLESYSVKHISKTIRAGDCILMRPSDPSKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCESCSAEEFNTI*

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