Glyma06g01160 - SoyBase

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Report for Sequence Feature Glyma06g01160

Feature Type:	gene_model
Chromosome:	Gm06
Start:	719814
stop:	720660
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21400	AT	Annotation by Michelle Graham. TAIR10: SHI-related sequence3 \| chr2:9158390-9159541 FORWARD LENGTH=174	SoyBase	E_val: 2.00E-42	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_I1K736	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K736_SOYBN	SoyBase	E_val: 9.00E-89	ISS
UniRef100_Q70I38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0216.460.nc protein n=1 Tax=Lotus japonicus RepID=Q70I38_LOTJA	SoyBase	E_val: 2.00E-51	ISS

Expression Patterns of Glyma06g01160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01160

Paralog	Evidence	Comments
Glyma04g01125	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g009200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01160

Limit To All Plant Sequences

>Glyma06g01160.2   sequence type=CDS   gene model=Glyma06g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTGGGAGTAAAGGATCAGATGCAAAGGGTGAGGCAAGGCGAAGAAGAAGTAGCATCAGGGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTTACGGTGCAGGACTTGCTGCAAGAACAAAGGTTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATCATAGGAGACGCCACTTTCAGGGTCAGGGAGGAGATCATCATATTCCTCAAAACCAAAACCAGATCAACCCATATTCAGGTTTAGAGTTGAGATTTCCGGCTGCTACGAATTCGATGGCTACATTTCGGTGCATTCACGTTCGTTCTATGGATGATGCGGTTAATGAAATAGCGTATCAAACATCTGTGAACATTGGAGGGCATGTATTTAGTGGACTACTATATGATCAAGGCCCTGAGTACCAAAGAGGTCATCAA

Predicted protein sequences of Glyma06g01160

Limit To All Plant Sequences

>Glyma06g01160.2   sequence type=predicted peptide   gene model=Glyma06g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGVKDQMQRVRQGEEEVASGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGDHHIPQNQNQINPYSGLELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEYQRGHQ

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