Glyma06g01130 - SoyBase

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Report for Sequence Feature Glyma06g01130

Feature Type:	gene_model
Chromosome:	Gm06
Start:	687480
stop:	701698
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39050	AT	Annotation by Michelle Graham. TAIR10: Kinesin motor family protein \| chr4:18193462-18200148 FORWARD LENGTH=1055	SoyBase	E_val: 0	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0242	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF176	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
UniRef100_G7JIM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin heavy chain-like protein n=1 Tax=Medicago truncatula RepID=G7JIM7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K734	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K734_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01130

Paralog	Evidence	Comments
Glyma04g01110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g009000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01130

Limit To All Plant Sequences

>Glyma06g01130.1   sequence type=CDS   gene model=Glyma06g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCCTCGCGCGCAAGGAGTAGCTCACCGTTTTCTTACCGAAAACCTTCGACTCCTTACTCTTCCACTTCTTCATCCTCTTCCTTCATCAACGGAAGGTTAATGCCTCGCTCCAGCTCTTCCTCTACGTCGTCGTTTTTCAACTCCGGAGGCCGATCCATTACTCCGAGTCGCGGTTGCAGCGACTCGGCGTATCACGGTTCGCGCGGTTACGCCGCCCGTTCTCCGGTGGCGTTCGGAGCGGAGGAGCTGATTGCGGAGCAGATGGTGGATTCGTCGAGGACCGGCGATAGCATTTCGGTCACGATTCGGTTTAGGCCGTTGAGTGAAAGGGAATATCAGAGAGGGGACGAGATCGCGTGGTATGCCGATGGCGACAAAATTGTCAGAAATGAGTATAATCCAGCTACTGCTTATGCATTTGATAGAGTTTTTGGACCACATACAAATTCAGACGAAGTGTATGAAGTGGCAGCGAAACCTGTGATAAAGGCTGCCATGGAGGGCGTCAATGGAACTGTGTTTGCCTATGGTGTGACAAGTAGTGGTAAGACACATACTATGCATGGAGACCAAAATTCTCCTGGTGTCATACCACTGGCTATAAAGGATGTTTTCAGTATGATTCAAGATACCCCAGGAAGAGAATTCTTACTCCGAGTGTCATATCTAGAAATATACAATGAGGTGATAAATGATTTACTTGATCCAACTGGCCAAAATTTGCGAGTTAGAGAAGATGCACAGGGAACTTATGTGGAGGGCATAAAGGAAGAAGTTGTTTTATCTCCTGGACATGCACTTTCTTTTATTGCTGCTGGAGAAGAGCATCGCCATGTTGGATCGAACAATTTTAATCTCTTTAGCAGCCGGAGTCACACAATATTTACACTGATGATAGAAAGCAGTGCTCATGGTGATGACTATGATGGAGTCATCTTCTCTCAGCTAAACTTGATTGATTTGGCTGGATCTGAGAGCTCAAAAACTGAAACAACTGGATTAAGAAGAAAGGAAGGATCTTACATCAACAAAAGTCTTCTGACACTTGGAACTGTTATAGGAAAACTGAGCGAGGGGAAGGCATCTCATGTTCCGTATCGAGATTCAAAGCTAACCCGCCTCCTGCAATCTTCTCTTAGTGGGCATGGCCATGTTTCACTTATATGCACAGTAACTCCAGCATCCAGTAACACGGAGGAAACTCATAATACCTTGAAGTTTGCCAGCAGGGCAAAACGAGTTGAAATATATGCGTCACGTAATAAGATTATTGATGAGAAATCTCTAATTAAGAAATACCAGAGAGAAATTTCAGTCCTCAAAGTAGAACTTGATCAACTAAAGAAGGGGATGCTAGTTGGTGTCAATCATGAGGAGATTTTGACCTTAAAGCAAAAGTTAGAAGAAGGTCAAGTGAAAATGCAATCAAGATTGGAAGAAGAGGAGGAAGCCAAGGCTGCTCTTATGAGTAGGATCCAGAGGCTAACCAAACTCATTCTGGTTTCCTCAAAGAATGCAATTCCTGGATATCTAACTGATGTTCCCAACCATCAGCGAAGTCACTCTGTTGGCGAGGATGATATTGAAAATGAGAGTCAGAAAGATTCTTCTGCAGTGTCATCAGATCAGTTTCATGATGGTAGACATAAAAGATCATCTAGTAGATGGAATGAAGAGTTCTCCCCAGCTAGCAGTACTGTTACTGAATCAACACAAGCTGGTGAACTGATAAGTAGAACAAAATTGACAGTGGGTGGGATGACAATGTCTGATCAGAAGGATCTACTGGTTGAACAAGTCAAAATGCTAGCCGGAGATATTGCTTTCAGTACCAGCACTCTGAAGCGCTTGATGGAGCAATCTGTAAATGACCCTGAAGGCTCCAAAATTCAGATTGAGAACTTGGAACGTGAGATCCAAGAAAAAAGGAAGCAAATGAGGGTGTTAGAACAAAGGTTAATTGAGACTGAAGAATCTCCTGTGGCTAATTCATCGCTAGTTGAAATGCAGCAGACAGTTACAAAGTTAATGACTCAATGTAATGAAAAGGCCTTTGAGTTGGAGCTAAAATCTGCAGACAACCGTGTCCTTCAGGAACAGCTAATTGATAAGTGTTCTGAAAACAGAGAGTTGCAAGAAAAGGTGAAGCAGCTAGAGCAGCAACTGGCGGCAATTAATAGTGGTACATTGTCAGTGTCTTCTGAACAGTGTGCATCAGGAGAAAACATTGATGACTTGAAAAAGAAAATACAATCCCAGGAAATTGAAAATGAAAAACTAAAGCTAGGGCAAGTTCACTTGTCAGAAGAGAATAGTGGGTTGCGTGTGCAGAATCAGAAACTCTCTGAAGAAGCTTCTTATGCCAAAGAACTGGCCTCTGCTGCTGCTGTGGAGCTGAAAAATTTGGCCGGGGAAGTGACAAAACTTTCATTGCAGAATGCAAAGTTGGAAAAAGAATTGATGGCCGCGCGAGACCTGGTCAACTCTCGTAGTGCTGTTGTGCAAACGGTTAATGGTGTCAACCGCAAGTACAATGATCCAAGAGCTGGAAGGAAGGGGAGGATTTCTAGCCGTGCTAATGAAATTTCAGGAACTGGTGTAGATGATTTTGAGTCAAGGAGTCTTGATGCTGATGATTTAAAGATAGAACTACAGGCTAGGAAACAACGAGAGGCAGCTCTGGAAGCTGCATTAGCCGAGAAGGAATTTGTGGAAGAACAGTACCGGAAAAAAACTGAAGAGGCCAAGAGAAGAGAAGAAGCCTTGGAGAACGATTTAGCAAATATGTGGGTCCTTGTTGCTAAGTTAAAAAAAGACGGGGGTGCTGTTCCAGAATCAAACATCGATAAAAAAAATGATGGCGCAGAACACATAAATGGTCCAAAAACTAATGACGTTGAAAGTAATATTGTTCCCAAGGAGCATCTTTTGGATGCACCGAAACCAGATGAGGAAATGCCCAAAGAAGAGCCCTTGGTTGTTCGCCTCAAGGCGCGCATGCAAGAAATGAAGGAAAAAGAACTCAAGTACCTTGGAAATGGTGATGCCAATTCCCATGTTTGTAAAGTATGTTTTGAATCTCCAACTGCAGCAATTCTGCTTCCATGCCGACATTTTTGTTTGTGTAAATCTTGTTCACTTGCTTGTTCTGAGTGTCCAATATGCCGCACAAGTATTACTGATAGGATTTTTGCTTTTACATAA

Predicted protein sequences of Glyma06g01130

Limit To All Plant Sequences

>Glyma06g01130.1   sequence type=predicted peptide   gene model=Glyma06g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSRARSSSPFSYRKPSTPYSSTSSSSSFINGRLMPRSSSSSTSSFFNSGGRSITPSRGCSDSAYHGSRGYAARSPVAFGAEELIAEQMVDSSRTGDSISVTIRFRPLSEREYQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHTNSDEVYEVAAKPVIKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGVIPLAIKDVFSMIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDDYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNTEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISVLKVELDQLKKGMLVGVNHEEILTLKQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSSKNAIPGYLTDVPNHQRSHSVGEDDIENESQKDSSAVSSDQFHDGRHKRSSSRWNEEFSPASSTVTESTQAGELISRTKLTVGGMTMSDQKDLLVEQVKMLAGDIAFSTSTLKRLMEQSVNDPEGSKIQIENLEREIQEKRKQMRVLEQRLIETEESPVANSSLVEMQQTVTKLMTQCNEKAFELELKSADNRVLQEQLIDKCSENRELQEKVKQLEQQLAAINSGTLSVSSEQCASGENIDDLKKKIQSQEIENEKLKLGQVHLSEENSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMAARDLVNSRSAVVQTVNGVNRKYNDPRAGRKGRISSRANEISGTGVDDFESRSLDADDLKIELQARKQREAALEAALAEKEFVEEQYRKKTEEAKRREEALENDLANMWVLVAKLKKDGGAVPESNIDKKNDGAEHINGPKTNDVESNIVPKEHLLDAPKPDEEMPKEEPLVVRLKARMQEMKEKELKYLGNGDANSHVCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTSITDRIFAFT*

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