Glyma06g01120 - SoyBase

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Report for Sequence Feature Glyma06g01120

Feature Type:	gene_model
Chromosome:	Gm06
Start:	672718
stop:	679388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34660	AT	Annotation by Michelle Graham. TAIR10: SH3 domain-containing protein \| chr4:16545595-16548294 REVERSE LENGTH=368	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG1118	KOG	Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation	JGI		ISS
PTHR22820	Panther	SH2 DOMAIN ADAPTOR PROTEIN	JGI		ISS
PTHR22820:SF9	Panther	UNCHARACTERIZED	JGI		ISS
PF00018	PFAM	SH3 domain	JGI		ISS
UniRef100_G7J7R7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutrophil cytosol factor n=2 Tax=Medicago truncatula RepID=G7J7R7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K731	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K731_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01120

Paralog	Evidence	Comments
Glyma04g01100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g008900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01120

Limit To All Plant Sequences

>Glyma06g01120.3   sequence type=transcript   gene model=Glyma06g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAATCCGAAGATCACTGATTTTTTGCTTTAGAGGATACCTTATCCTCCCTCATGATTGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTACCAGTGGTAGTACTTTATCAAGAGCTGCGCTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACTAACATGGCAATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGACTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATAGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGTTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTATGTATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTACTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACATGTTTTTTCTTTTCTTGTGATTATCGATCGCTTTAAGATTCTCTTTTGTATTAGAATGATAATAGGTATGGTTTAGTTAAAAGTATTACATATTTATATTCACCGTGTTAAAAAAAATTAATCTAAATTGAGTATGCAATTTTGCTTTTATTTTATCTCAATAAAAAAAAATCCATGTTTGAATGA

Coding sequences of Glyma06g01120

Limit To All Plant Sequences

>Glyma06g01120.1   sequence type=CDS   gene model=Glyma06g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTACCAGTGGTAGTACTTTATCAAGAGCTGCGCTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACTAACATGGCAATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGACTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATAGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma06g01120.3   sequence type=CDS   gene model=Glyma06g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTACCAGTGGTAGTACTTTATCAAGAGCTGCGCTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACTAACATGGCAATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGACTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAGGAAGTTAATGGTGTATATGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATAGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

Predicted protein sequences of Glyma06g01120

Limit To All Plant Sequences

>Glyma06g01120.1   sequence type=predicted peptide   gene model=Glyma06g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVYASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma06g01120.3   sequence type=predicted peptide   gene model=Glyma06g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVYASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

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