Glyma06g01080 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g01080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	641110
stop:	642799
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20400	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr5:6894871-6896185 FORWARD LENGTH=348	SoyBase	E_val: 5.00E-60	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7J7S5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-norcoclaurine synthase n=1 Tax=Medicago truncatula RepID=G7J7S5_MEDTR	SoyBase	E_val: 2.00E-84	ISS
UniRef100_I1K729	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K729_SOYBN	SoyBase	E_val: 4.00E-122	ISS

Expression Patterns of Glyma06g01080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01080

Paralog	Evidence	Comments
Glyma04g01066	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g008400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g01080

Limit To All Plant Sequences

>Glyma06g01080.3   sequence type=transcript   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGGCATAGCATTATTATTTTTGGCAAAGGAATGAGCAATTTCCTCCATTTCTCTTGGGCTAGTGACACGAGTATTTAATCTCAATGCAGGAATATTGTCCTACAGTATACCGAAAGTATAAGGCTGAAACTGAAGTAATTATTAAGGCCATGACAAATTCACTGAACTTGGAAGAGGATTGCTTCCTAAATGAATGTGGAGAGAGAGATGTTATGTTTCTGAGATTCAACTACTACCCTCCATGTCCAATGCCTGATCATGTTCTCGGCCTGAAGCCACATGCGGATGGATCCACCATTACTTTTCTGTTGCAAGATAAACTAGTACAAGGCTTGCAAGGCCTCAAATATGATCAGTGGTTTAAAGTTCCAATCATCCTTGATGCTCTCGTCATTAATGTTGGTGATCAAACAGAGATACTGAGCAATGGAATTTTTCGGAGTCCAATACACAGGGCAGTGATAAATTCAGAAAAGGAAAGGCTCACAGTGGCAATATTCTGCCTCGCGGATTCAGAAAAAGAGATTAAACCGGTGAAAAATTATTCTGAGATCTATTTCCAGTATTATCACCAAGGAAAAAGACCAATTGAAGCTTCAAAGATTTAACAATGAAACTGAATACTTCTTGGATTAGTTAAATAAGACAGTCTTTTTCTTATCAGCAGTTAAGGAAGAGAGACTGGAAATTTAACAAATTCAGTGTAACGAAATTGCAAGTTATGCCCGCTAGACTAGTATAAATTGAATTCATGATTTGTTAGAGTAATTAAGGGTTG

>Glyma06g01080.4   sequence type=transcript   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCTTCCCCACTTAGTGATGGCAGAATCGGGTAAGGTGGAGATAGTTGGTAAACCTGTCCAAGACTTGGTGTTGAATTCTGAAAATCAGCCAAAAAACTATATCTACAAGGAAGGTGGTGGAGGATTTCGTGATGCACAGGATGATGACATTCCGGTGATCCACCTTCATCGCCTCTCATCTCCATCTACAGCACAGCAAGAGCTTGCTAAACTCCACCATGCACTCAATTCATGGGGCTGCTTTCAGGCAATAAACCATGGGATGAAAAGCTCATTTCTAGACAAAATGAGATAAGTTTCAAAGAAATTCTTTCAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTAGGGAAAGGGAACCAAACAATATTGAAGGATATGACAATGATATAATATATTCAGAAAATCAAAGGCTTGACTGGACTGACAGAGTATACCTGAAAGTGCTTCCTGAAGATCAGAGGAAGTTCAAATTTTGGCCTCAAAACCCCAATGATTTCAGTTATACATTCCTGTCCCCTCCAACTCTCAATGAATGTTCTTTTTTACATGAAGTAACTAGCTGGAATATTGTCCTACAGTATACCGAAAGTATAAGGCTGAAACTGAAGTAATTATTAAGGCCATGACAAATTCACTGAACTTGGAAGAGGATTGCTTCCTAAATGAATGTGGAGAGAGAGATGTTATGTTTCTGAGATTCAACTACTACCCTCCATGTCCAATGCCTGATCATGTTCTCGGCCTGAAGCCACATGCGGATGGATCCACCATTACTTTTCTGTTGCAAGATAAACTAGTACAAGGCTTGCAAGGCCTCAAATATGATCAGTGGTTTAAAGTTCCAATCATCCTTGATGCTCTCGTCATTAATGTTGGTGATCAAACAGAGATACTGAGCAATGGAATTTTTCGGAGTCCAATACACAGGGCAGTGATAAATTCAGAAAAGGAAAGGCTCACAGTGGCAATATTCTGCCTCGCGGATTCAGAAAAAGAGATTAAACCGGTGAAAAATTATTCTGAGATCTATTTCCAGTATTATCACCAAGGAAAAAGACCAATTGAAGCTTCAAAGATTTAACAATGAAACTGAATACTTCTTGGATTAGTTAAATAAGACAGTCTTTTTCTTATCAGCAGTTAAGGAAGAGAGACTGGAAATTTAACAAATTCAGTGTAACGAAATTGCAAGTTATGCCCGCTAGACTAGTATAAATTGAATTCATGATTTGTTAGAGTAATTAAGGGTTG

Coding sequences of Glyma06g01080

Limit To All Plant Sequences

>Glyma06g01080.2   sequence type=CDS   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAATCGGGTAAGGTGGAGATAGTTGGTAAACCTGTCCAAGACTTGGTGTTGAATTCTGAAAATCAGCCAAAAAACTATATCTACAAGGAAGGTGGTGGAGGATTTCGTGATGCACAGGATGATGACATTCCGGTGATCCACCTTCATCGCCTCTCATCTCCATCTACAGCACAGCAAGAGCTTGCTAAACTCCACCATGCACTCAATTCATGGGGCTGCTTTCAGGAATATTGTCCTACAGTATACCGAAAGTATAAGGCTGAAACTGAAGTAATTATTAAGGCCATGACAAATTCACTGAACTTGGAAGAGGATTGCTTCCTAAATGAATGTGGAGAGAGAGATGTTATGTTTCTGAGATTCAACTACTACCCTCCATGTCCAATGCCTGATCATGTTCTCGGCCTGAAGCCACATGCGGATGGATCCACCATTACTTTTCTGTTGCAAGATAAACTAGTACAAGGCTTGCAAGGCCTCAAATATGATCAGTGGTTTAAAGTTCCAATCATCCTTGATGCTCTCGTCATTAATGTTGGTGATCAAACAGAGATACTGAGCAATGGAATTTTTCGGAGTCCAATACACAGGGCAGTGATAAATTCAGAAAAGGAAAGGCTCACAGTGGCAATATTCTGCCTCGCGGATTCAGAAAAAGAGATTAAACCGGTGAAAAATTATTCTGAGATCTATTTCCAGTATTATCACCAAGGAAAAAGACCAATTGAAGCTTCAAAGATTTAA

>Glyma06g01080.3   sequence type=CDS   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGAATATTGTCCTACAGTATACCGAAAGTATAAGGCTGAAACTGAAGTAATTATTAAGGCCATGACAAATTCACTGAACTTGGAAGAGGATTGCTTCCTAAATGAATGTGGAGAGAGAGATGTTATGTTTCTGAGATTCAACTACTACCCTCCATGTCCAATGCCTGATCATGTTCTCGGCCTGAAGCCACATGCGGATGGATCCACCATTACTTTTCTGTTGCAAGATAAACTAGTACAAGGCTTGCAAGGCCTCAAATATGATCAGTGGTTTAAAGTTCCAATCATCCTTGATGCTCTCGTCATTAATGTTGGTGATCAAACAGAGATACTGAGCAATGGAATTTTTCGGAGTCCAATACACAGGGCAGTGATAAATTCAGAAAAGGAAAGGCTCACAGTGGCAATATTCTGCCTCGCGGATTCAGAAAAAGAGATTAAACCGGTGAAAAATTATTCTGAGATCTATTTCCAGTATTATCACCAAGGAAAAAGACCAATTGAAGCTTCAAAGATTTAA

>Glyma06g01080.4   sequence type=CDS   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAATTCACTGAACTTGGAAGAGGATTGCTTCCTAAATGAATGTGGAGAGAGAGATGTTATGTTTCTGAGATTCAACTACTACCCTCCATGTCCAATGCCTGATCATGTTCTCGGCCTGAAGCCACATGCGGATGGATCCACCATTACTTTTCTGTTGCAAGATAAACTAGTACAAGGCTTGCAAGGCCTCAAATATGATCAGTGGTTTAAAGTTCCAATCATCCTTGATGCTCTCGTCATTAATGTTGGTGATCAAACAGAGATACTGAGCAATGGAATTTTTCGGAGTCCAATACACAGGGCAGTGATAAATTCAGAAAAGGAAAGGCTCACAGTGGCAATATTCTGCCTCGCGGATTCAGAAAAAGAGATTAAACCGGTGAAAAATTATTCTGAGATCTATTTCCAGTATTATCACCAAGGAAAAAGACCAATTGAAGCTTCAAAGATTTAA

Predicted protein sequences of Glyma06g01080

Limit To All Plant Sequences

>Glyma06g01080.2   sequence type=predicted peptide   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESGKVEIVGKPVQDLVLNSENQPKNYIYKEGGGGFRDAQDDDIPVIHLHRLSSPSTAQQELAKLHHALNSWGCFQEYCPTVYRKYKAETEVIIKAMTNSLNLEEDCFLNECGERDVMFLRFNYYPPCPMPDHVLGLKPHADGSTITFLLQDKLVQGLQGLKYDQWFKVPIILDALVINVGDQTEILSNGIFRSPIHRAVINSEKERLTVAIFCLADSEKEIKPVKNYSEIYFQYYHQGKRPIEASKI*

>Glyma06g01080.3   sequence type=predicted peptide   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEYCPTVYRKYKAETEVIIKAMTNSLNLEEDCFLNECGERDVMFLRFNYYPPCPMPDHVLGLKPHADGSTITFLLQDKLVQGLQGLKYDQWFKVPIILDALVINVGDQTEILSNGIFRSPIHRAVINSEKERLTVAIFCLADSEKEIKPVKNYSEIYFQYYHQGKRPIEASKI*

>Glyma06g01080.4   sequence type=predicted peptide   gene model=Glyma06g01080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNSLNLEEDCFLNECGERDVMFLRFNYYPPCPMPDHVLGLKPHADGSTITFLLQDKLVQGLQGLKYDQWFKVPIILDALVINVGDQTEILSNGIFRSPIHRAVINSEKERLTVAIFCLADSEKEIKPVKNYSEIYFQYYHQGKRPIEASKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain