Glyma06g01070 - SoyBase

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Report for Sequence Feature Glyma06g01070

Feature Type:	gene_model
Chromosome:	Gm06
Start:	628110
stop:	640022
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16485	AT	Annotation by Michelle Graham. TAIR10: nucleic acid binding;zinc ion binding;DNA binding \| chr2:7137269-7145222 REVERSE LENGTH=1773	SoyBase	E_val: 0	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0042393	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone binding	SoyBase	N/A	ISS
KOG1946	KOG	RNA polymerase I transcription factor UAF	JGI		ISS
PTHR26218	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26218:SF58	Panther		JGI		ISS
PF02201	PFAM	SWIB/MDM2 domain	JGI		ISS
PF02213	PFAM	GYF domain	JGI		ISS
PF03126	PFAM	Plus-3 domain	JGI		ISS
UniRef100_G7J7T1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=Medicago truncatula RepID=G7J7T1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K728	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K728_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01070

Paralog	Evidence	Comments
Glyma04g01042	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g008300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01070

Limit To All Plant Sequences

>Glyma06g01070.1   sequence type=CDS   gene model=Glyma06g01070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTCGAAAACGAGGAAGCTCCACTCCAACAACACTCTGATTCACAATGCCACACCGACCTGCCAAATCTCCCCTACGCCTCTGCCGTTGACCTTGAAGAGGCGGCGGCAACGACGACGGAGGCTGTGGCGGTTGAACCCGATGCGCTGGCGGTGTCCGACGATGGCGCCGAAACGCAAGTGACGGACGTAGCGGGTGACGAGATGATTGAGGAGAAGGCGAACGAAGGAATTGATGTGGATGACGTGGCTTTGGAGACGGATATGGTGGAAGAGGAACCGAATTTGGCAATTGATGCCGAAGACGACGAAATTGAGGACAGGAACACAAATGAAGACGCTTTGATGGAAGACGAACAACAACAAGAAGAAGAGGACGTAGAGCAAGAAGGAGAGGGGGAGGAAGAAGAACAGCAACAAGTAGATGAGGAGGAAGAAGGAGAACAGCAACAAGAAGATGAGGAAGAAGAAGGAGAAGAAGAAGAAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCAAGGAAAAGAAGAAGATGGTGGAATGGCAATGACAGAAGACACAGAGAAGTCGGAGAAGAGTGCCGCTGTGAGTGGCGGGAAGAGGAGGCGTGGCGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCAAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATCTTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGGTGCATCAAAGACACTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTAATGTTAATTGAACAGAATGAACAGGGAAACAATGTGGGACAAATAGATTTTGATGACAGAAACAGCTGGGAGTATCTCTTCAAGGACTATTACATAGATATAAAAGAAAAACTATCTCTCACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAAGAATCACCGGATGAAATTTTTGATGCCACTAATGACAGAGGATCAGATTCAGATAGCTCCTATGAGAATGCAGATTTGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGGGAAGTCCCGTTCCAAAGGAGATGACAGCTCAGAGTGGGCTTCAACAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCATACTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAAAGTGGGACATTTTGAAACGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGATGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATGAGTCATTTGGAAGGTGATGGCAATCCCAATTCACATACGAAAGCTGGCAAAGATAAGAGACGAAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAACTTGGTGGAAGATCTTCTTGAAGATACAGAGAAGTTCCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGAAATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGAAGCTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATTCCAGAAATACACGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGCAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCAAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCATGAACTCGGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAACGAGGCACTAAATGATGCTCAATTGCATCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAACCTTGGAAAGTGGCGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTTTCTTCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATAAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTACACAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCCTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATCAATAGTGGATAAAGCTCAATCGGTGTATGATTTACATTACCCATCCTCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGTTCAAGCTGGAGAAAGACTGTCATTAGATCAAAATTGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACAACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAAGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAGGCAGTCACAGAGTTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGTATTAGTTCAGCTTCTACGGATAATAACAAGTTACATCCACAAGCAACAGCAGTGGCACCTGTTGTGGCTTCAGGGGTTGACATCAAAATGACAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCACAACTCTCATGCTGAAACTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCATCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTGCCCAGCCAGCTTCCCATGCCCCCTGGGGTGATGCTTCGTCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCAATTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACACCACAGCTCCATCTCCAGCTCAACCCAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTGCCTCCTAGTCAGGGGCTGCCTCCCGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGTCTTGCACCTGGAAATGCCAATCCTGGTTGGGCTGCCCCGACTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAATCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGATTTTCTACACACTTAG

Predicted protein sequences of Glyma06g01070

Limit To All Plant Sequences

>Glyma06g01070.1   sequence type=predicted peptide   gene model=Glyma06g01070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVENEEAPLQQHSDSQCHTDLPNLPYASAVDLEEAAATTTEAVAVEPDALAVSDDGAETQVTDVAGDEMIEEKANEGIDVDDVALETDMVEEEPNLAIDAEDDEIEDRNTNEDALMEDEQQQEEEDVEQEGEGEEEEQQQVDEEEEGEQQQEDEEEEGEEEEEAAAEEEEEEEEEEEEKQGKEEDGGMAMTEDTEKSEKSAAVSGGKRRRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNASYMCYTCTFSLCKGCIKDTVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDRNSWEYLFKDYYIDIKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDEIFDATNDRGSDSDSSYENADLSRSKRKKAKKRGKSRSKGDDSSEWASTELLEFVMHMRNGDKSVLSQFDVHTLLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPKVGHFETLKLLESHFLLKDDSQAEDLQGSVVDTEMSHLEGDGNPNSHTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTEILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDANEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNHELGRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKLSSTLESGAKNTQPLVASESFSSAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLHKWSNTGYFPADLRIWRTTEKQDDSILLTDALAGNFSKEPSIVDKAQSVYDLHYPSSYSRKSPQQGIEVQAGERLSLDQNCGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNEATNLPSPTPQTTPGGTKGLAFENKWSPTPVQLPGSLVGNSFPGSHRVLQASVVVHPEHAVQNAEKGSSSQPGISSASTDNNKLHPQATAVAPVVASGVDIKMTGANMQNQVVSSHNSHAETQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPAQPASHAPWGDASSVQNTASFNTGNPIASLPTPGFLGMTAPEPWRPPASSSQSNTTAPSPAQPNMPWGMGMPGNQNMNWGGVVPANMNVNWMPAQVPAPGNSNPGWAAPSQGLPPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWAAPTGNPGMWGSEQSHNGDRFPNQGDRRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYYESGRCRKGTSCDFLHT*

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