SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16485 | AT | Annotation by Michelle Graham. TAIR10: nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773 | SoyBase | E_val: 0 | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0042393 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone binding | SoyBase | N/A | ISS |
| KOG1946 | KOG | RNA polymerase I transcription factor UAF | JGI | ISS | |
| PTHR26218 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26218:SF58 | Panther | JGI | ISS | ||
| PF02201 | PFAM | SWIB/MDM2 domain | JGI | ISS | |
| PF02213 | PFAM | GYF domain | JGI | ISS | |
| PF03126 | PFAM | Plus-3 domain | JGI | ISS | |
| UniRef100_G7J7T1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=Medicago truncatula RepID=G7J7T1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K728 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K728_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g01070 not represented in the dataset |
Glyma06g01070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g01042 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g008300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g01070.1 sequence type=CDS gene model=Glyma06g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGTCGAAAACGAGGAAGCTCCACTCCAACAACACTCTGATTCACAATGCCACACCGACCTGCCAAATCTCCCCTACGCCTCTGCCGTTGACCTTGAAGAGGCGGCGGCAACGACGACGGAGGCTGTGGCGGTTGAACCCGATGCGCTGGCGGTGTCCGACGATGGCGCCGAAACGCAAGTGACGGACGTAGCGGGTGACGAGATGATTGAGGAGAAGGCGAACGAAGGAATTGATGTGGATGACGTGGCTTTGGAGACGGATATGGTGGAAGAGGAACCGAATTTGGCAATTGATGCCGAAGACGACGAAATTGAGGACAGGAACACAAATGAAGACGCTTTGATGGAAGACGAACAACAACAAGAAGAAGAGGACGTAGAGCAAGAAGGAGAGGGGGAGGAAGAAGAACAGCAACAAGTAGATGAGGAGGAAGAAGGAGAACAGCAACAAGAAGATGAGGAAGAAGAAGGAGAAGAAGAAGAAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCAAGGAAAAGAAGAAGATGGTGGAATGGCAATGACAGAAGACACAGAGAAGTCGGAGAAGAGTGCCGCTGTGAGTGGCGGGAAGAGGAGGCGTGGCGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCAAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATCTTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGGTGCATCAAAGACACTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTAATGTTAATTGAACAGAATGAACAGGGAAACAATGTGGGACAAATAGATTTTGATGACAGAAACAGCTGGGAGTATCTCTTCAAGGACTATTACATAGATATAAAAGAAAAACTATCTCTCACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAAGAATCACCGGATGAAATTTTTGATGCCACTAATGACAGAGGATCAGATTCAGATAGCTCCTATGAGAATGCAGATTTGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGGGAAGTCCCGTTCCAAAGGAGATGACAGCTCAGAGTGGGCTTCAACAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCATACTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAAAGTGGGACATTTTGAAACGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGATGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATGAGTCATTTGGAAGGTGATGGCAATCCCAATTCACATACGAAAGCTGGCAAAGATAAGAGACGAAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAACTTGGTGGAAGATCTTCTTGAAGATACAGAGAAGTTCCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGAAATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGAAGCTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATTCCAGAAATACACGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGCAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCAAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCATGAACTCGGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAACGAGGCACTAAATGATGCTCAATTGCATCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAACCTTGGAAAGTGGCGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTTTCTTCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATAAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTACACAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCCTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATCAATAGTGGATAAAGCTCAATCGGTGTATGATTTACATTACCCATCCTCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGTTCAAGCTGGAGAAAGACTGTCATTAGATCAAAATTGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACAACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAAGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAGGCAGTCACAGAGTTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGTATTAGTTCAGCTTCTACGGATAATAACAAGTTACATCCACAAGCAACAGCAGTGGCACCTGTTGTGGCTTCAGGGGTTGACATCAAAATGACAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCACAACTCTCATGCTGAAACTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCATCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTGCCCAGCCAGCTTCCCATGCCCCCTGGGGTGATGCTTCGTCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCAATTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACACCACAGCTCCATCTCCAGCTCAACCCAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTGCCTCCTAGTCAGGGGCTGCCTCCCGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGTCTTGCACCTGGAAATGCCAATCCTGGTTGGGCTGCCCCGACTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAATCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGATTTTCTACACACTTAG
>Glyma06g01070.1 sequence type=predicted peptide gene model=Glyma06g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVENEEAPLQQHSDSQCHTDLPNLPYASAVDLEEAAATTTEAVAVEPDALAVSDDGAETQVTDVAGDEMIEEKANEGIDVDDVALETDMVEEEPNLAIDAEDDEIEDRNTNEDALMEDEQQQEEEDVEQEGEGEEEEQQQVDEEEEGEQQQEDEEEEGEEEEEAAAEEEEEEEEEEEEKQGKEEDGGMAMTEDTEKSEKSAAVSGGKRRRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNASYMCYTCTFSLCKGCIKDTVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDRNSWEYLFKDYYIDIKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDEIFDATNDRGSDSDSSYENADLSRSKRKKAKKRGKSRSKGDDSSEWASTELLEFVMHMRNGDKSVLSQFDVHTLLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPKVGHFETLKLLESHFLLKDDSQAEDLQGSVVDTEMSHLEGDGNPNSHTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTEILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDANEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNHELGRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKLSSTLESGAKNTQPLVASESFSSAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLHKWSNTGYFPADLRIWRTTEKQDDSILLTDALAGNFSKEPSIVDKAQSVYDLHYPSSYSRKSPQQGIEVQAGERLSLDQNCGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNEATNLPSPTPQTTPGGTKGLAFENKWSPTPVQLPGSLVGNSFPGSHRVLQASVVVHPEHAVQNAEKGSSSQPGISSASTDNNKLHPQATAVAPVVASGVDIKMTGANMQNQVVSSHNSHAETQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPAQPASHAPWGDASSVQNTASFNTGNPIASLPTPGFLGMTAPEPWRPPASSSQSNTTAPSPAQPNMPWGMGMPGNQNMNWGGVVPANMNVNWMPAQVPAPGNSNPGWAAPSQGLPPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWAAPTGNPGMWGSEQSHNGDRFPNQGDRRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYYESGRCRKGTSCDFLHT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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